1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaactgagactataattgctaaatttatatttgcaggatgccatttgaagtttaattgttgctttgcttcatcaccaacatggtggaaagtgagaataaatgatcctttttcccaataacattatgtgtgattcttaaatttccggacataaaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCAGTTTGCCAAGCAGATCAGCCCTCTGTGGATAGTGTATCAATGAACACT
species | Glycine max |
transcript | GLYMA10G29060.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|19053665|gb|BM732332.1|BM732332
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGTTATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|120495626|gb|EH223793.1|EH223793
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|37996834|gb|CF808423.1|CF808423
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|6914749|gb|AW396279.1|AW396279
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|31464154|gb|CD406182.1|CD406182
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: TTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTTATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|10252841|gb|BE820607.1|BE820607
genomic: TTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|120496010|gb|EH224177.1|EH224177
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|12488733|gb|BG042256.1|BG042256
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|120495911|gb|EH224078.1|EH224078
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|37995750|gb|CF807339.1|CF807339
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCEST: gi|57574161|gb|CX547136.1|CX547136
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
EST: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAG GTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
genomic: GGTGTTGTGGAGGAATTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGgtaactgaga ... aaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGC
tttttcccaataacattatgtgtgattcttaaatttccggacataaaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCAGTTTGCCAAGCAGATCAGCCCTCTGTGGATAGTGTATCAATGAACACT
caataac putative branch site (score: 2)
tgattcttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactgagactataattgctaaatttatatttgcaggatgccatttgaagtttaattgttgctttgcttcatcaccaacatggtggaaagtgagaataaatgatcctttttcccaataacattatgtgtgattcttaaatttccggacataaaaaatgcagGTTAGGCAAGGATTTTCCGTCTAATTCGAATCCTGGGATTTTCCGCTGTGCAGTTTGCCAAGCAGATCAGCCCTCTGTGGATAGTGTATCAATGAACACT
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