1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attttggaaatgatgtgttctggtatcaaaatatgctttctatgattttaattttttttttgagtttcgggttgctttaaccttgtgttttgccccatagGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACA
species | Glycine max |
transcript | GLYMA10G29000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAG GTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATEST: gi|19934371|gb|BQ079401.1|BQ079401
genomic: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGgtattatgtt ... tgccccatagGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAAT
EST: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAG GTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATEST: gi|254341052|gb|GR854780.1|GR854780
genomic: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGgtattatgtt ... tgccccatagGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAAT
EST: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAG GTTATCATCAATCACCAGEST: gi|19935944|gb|BQ080652.1|BQ080652
genomic: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGgtattatgtt ... tgccccatagGTTATCATCAATCACCAG
EST: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAG GTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATEST: gi|19935942|gb|BQ080651.1|BQ080651
genomic: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGgtattatgtt ... tgccccatagGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAAT
EST: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAG GTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAAT
genomic: CTCTTCGAACTGTTGGAAATATTGTCACTGGAGATGATATGCAGACACAGgtattatgtt ... tgccccatagGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAAT
ttttaattttttttttgagtttcgggttgctttaaccttgtgttttgccccatagGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACA
ctttaac putative branch site (score: 3)
ttttgcccc putative PPT
attttttttttgagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttggaaatgatgtgttctggtatcaaaatatgctttctatgattttaattttttttttgagtttcgggttgctttaaccttgtgttttgccccatagGTTATCATCAATCACCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - -tgtgttc
- - - - - - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgtg