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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttatatatgtctgcatttcagccccttcctccttaaattattcctcttcattcaacctttctgttttccttggttagattgtagttttacttttccttatttggtcttgacctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTACAGCCATTGACGTCT

Basic information

species Glycine max
transcript GLYMA10G28530.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312851|gb|BG406502.1|BG406502
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAAATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|7926516|gb|AW832542.1|AW832542
EST:     CACACACTCACCAGGTTAAATTATGTGACTNTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|151395928|gb|EV265805.1|EV265805
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|16997089|gb|BM086461.1|BM086461
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|6566727|gb|AW234359.1|AW234359
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|5058458|gb|AI736869.1|AI736869
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|13311272|gb|BG404905.1|BG404905
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGA
EST: gi|151411363|gb|EV281174.1|EV281174
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|10843615|gb|BF066891.1|BF066891
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|6073128|gb|AW102515.1|AW102515
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|10710049|gb|BF009773.1|BF009773
EST:     GGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: GGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: gi|7926372|gb|AW832398.1|AW832398
EST:     CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG                         GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttggttagattgtagttttacttttccttatttggtcttgacctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTACAGCCATTGACGTCT
                                       tcttgac  putative branch site (score: 3)
                                             ccttt  CT-rich tract
                   ttttactttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgttatatatgtctgcatttcagccccttcctccttaaattattcctcttcattcaacctttctgttttccttggttagattgtagttttacttttccttatttggtcttgacctttgacagGTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTACAGCCATTGACGTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA