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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttctgtttcttaggctcatttattttttttaaaagttttgcacattatggatagagaaagaagcatgtttttttgtgcatgctattgaggccatatctccatattcttgcagGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAG

Basic information

species Glycine max
transcript GLYMA10G28200.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28200.2 (Glycine max), 3'ss of exon 7
lower sequence: AT5G26680.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgggtttctgtttcttaggctc--atttattttttttaaaagttttgcacattatggatagagaaagaagcatgtttttttgtgcatgctattgaggccatatctccatattcttgcagGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAG
|| |  |  | ||| ||   ||   | |  ||    |    ||||||  |    ||  |     |||| |      | |      | |  || |      |||  |    | |||  ||||| ||||| ||||||||||| |||||||||||||| || || |||||||| ||||| |||||||||
gtagtatattattttttcatctatgaatcgttggactccttagtttt-tatggcatccacttc-aaagcaattgaatctaggactcgtattaatatatgtataaatttccactctc-cagGTGACAAAACAGCATAATGATGACTGCAAAAGACTCTTGAGACTCATGGGGGTGCCTGTTGTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205514|gb|BU964767.1|BU964767
EST:     ACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAG                         GTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGA
genomic: ACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAGgtgggtttct ... attcttgcagGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGA
EST: gi|19346984|gb|BM891864.1|BM891864
EST:     ACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAG                         GTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGA
genomic: ACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAGgtgggtttct ... attcttgcagGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGA
EST: gi|193554795|gb|FK513112.1|FK513112
EST:     ACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAG                         GTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGA
genomic: ACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAGgtgggtttct ... attcttgcagGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGA
EST: gi|208336063|gb|GE134204.1|GE134204
EST:     ACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAG                         GTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGA
genomic: ACCGCCAATAAGGAAGACATTGAAAAATTCAGTAAACGGACAGTGAAGgtgggtttct ... attcttgcagGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaagcatgtttttttgtgcatgctattgaggccatatctccatattcttgcagGTTACAAAGCAGCATAATGACGACTGCAAAAGACTTTTAAGGCTCATGGGAGTGCCCGTTGTTGAG
                                            tattctt  CT-rich tract
       atgttttttt  TA-rich tract