1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atccaacgatggtgtaaactgatctctcctcatttaattaccttaactatgaaaaggactgtaataatgcagtacatctaatcggtgtacatgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATGAAAAACATGAGGACATGATTCATGACGATAGAGGTCAAGCTGATGGAG
species | Glycine max |
transcript | GLYMA10G24350.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|193670506|gb|FK610376.1|FK610376
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGANEST: gi|151403344|gb|EV273154.1|EV273154
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|213605917|gb|DB983622.1|DB983622
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: TTG-CATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCTCCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|192309061|gb|FG999036.1|FG999036
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTTTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|26268201|gb|CA819264.1|CA819264
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GTATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|10252487|gb|BE820253.1|BE820253
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|58023144|gb|CX709885.1|CX709885
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|15203108|gb|BI425876.1|BI425876
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGATTTTGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|23052917|gb|BU577408.1|BU577408
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|6951211|gb|AW423340.1|AW423340
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|13790409|gb|BG653000.1|BG653000
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|193564897|gb|FK520096.1|FK520096
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|8282401|gb|BE019962.1|BE019962
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|192320514|gb|FK011924.1|FK011924
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTTTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|214008290|gb|DB989832.1|DB989832
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|16344759|gb|BI970354.1|BI970354
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATEST: gi|193602036|gb|FK558817.1|FK558817
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
EST: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAG GCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
genomic: CTGCCATTGTGAATTCTCAGACTCTTGAAGAGGTTGCTAGACTTGAAAAGgtgcttgctt ... atgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGAT
actatgaaaaggactgtaataatgcagtacatctaatcggtgtacatgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATGAAAAACATGAGGACATGATTCATGACGATAGAGGTCAAGCTGATGGAG
atctaat putative branch site (score: 3)
tgtaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccaacgatggtgtaaactgatctctcctcatttaattaccttaactatgaaaaggactgtaataatgcagtacatctaatcggtgtacatgattgcagGCATTGAAGTCAGGCCAGCTTCCTGCAGATTTATTGTTGGATAATGTTGATGAAAAACATGAGGACATGATTCATGACGATAGAGGTCAAGCTGATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - -gatggtg
- - - - - - - - - - - -ctctcct
- - - - - - - - - - - - - - - - - - - - ccttaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcagta