Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggccattgtagaatctataatctaattcatttccatttgtttgttaaattggattcattaattctaccaatacctccagGAGTTTGTTGCAAGCCAAAATAGGCCAAAGTCTACAAGGATAACCCGGATTATTCAAGGTTATGAGCCACATTCATTTAAGTCCAACTTTGATTCTTGGC

Basic information

species Glycine max
transcript GLYMA10G21350.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 7
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaaggccattgtagaatc-tataatctaattcatttccatttgtttgttaaattggattcattaattctaccaatacctccagGAGTTTGTTGCAAGCCAAAATAGGCCAAAGTCTACAAGGATAACCCGGATTATTCAAGGTTATGAGCCACATTCATTTAAGTCCAACTTTGATTCTTGGC
|||| ||     ||||||| | |||  |  ||    |     | | ||    ||||| |   | | || ||||     || ||||| |||||||| ||  |||||||||||||| | ||| | ||||||||  ||||||||||||||||||| ||||| || ||||| |||||||| |||||||
gtaaagc-----tagaatcgtctaacttgcttagccttagaatatctga-ggattggttc--tcatttttaccttcctctacagGATTTTGTTGCTAGTGAAAATAGGCCAAAGGCAACACGCATAACCCGTGTTATTCAAGGTTATGAGCCCCATTCTTTCAAGTCTAACTTTGACTCTTGGC

upper sequence: GLYMA10G21350.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 7
gtaaggccattgtagaatct-ataatctaattcatttccatttgtt-tgttaaattggattcattaattctaccaatacctccagGAGTTTGTTGCAAGCCAAAATAGGCCAAAGTCTACAAGGATAACCCGGATTATTCAAGGTTATGAGCCACATTCATTTAAGTCCAACTTTGATTCTTGGC
           |||||| || || ||| | || ||     ||  || | | | |  | | ||     | | |       |  ||||| |||||| | ||||||||||| |||||| | ||  |  |||||||| |||||||||| |||||| |||||||||| ||||||||||||||||||||||
-----------gtagaagcttatcatcca-tttatccatgttctttatataacaacgaactctcatctccaattttcttcctcagGAATTTGTTTCTAGCCAAAATAGACCAAAGGCAACTCGTGTAACCCGGGTTATTCAAGGGTATGAGACACATTCATTCAAGTCCAACTTTGATTCTTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcatttccatttgtttgttaaattggattcattaattctaccaatacctccagGAGTTTGTTGCAAGCCAAAATAGGCCAAAGTCTACAAGGATAACCCGGATTATTCAAGGTTATGAGCCACATTCATTTAAGTCCAACTTTGATTCTTGGC
                               cattaat  putative branch site (score: 3)
                                              tacctcc  putative PPT
          atttgtttgttaaatt  TA-rich tract