1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttaacattgattattgactcaatagataagggcgtttatagcttcctactgtattgtaccattctgactcactatgtagaccacattcttctgtttatgttgtgtgtcatcattttcatgaccattaatcttatactatatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAGTTGGTTAGTCAACTTCTGGAACATGCACAAGCTCAAACAACACGATGA
species | Glycine max |
transcript | GLYMA10G16090.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|17401617|gb|BM178399.1|BM178399
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAACAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|192314055|gb|FK008795.1|FK008795
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|208298299|gb|GE095488.1|GE095488
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: CCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|58015713|gb|CX702455.1|CX702455
genomic: CCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|209696629|gb|BW666925.1|BW666925
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|193403478|gb|FK366848.1|FK366848
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTA-TCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAAACGGACNCACTTACEST: gi|209697045|gb|BW667035.1|BW667035
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAA-CGGACGCACTTAC
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|209707122|gb|BW661576.1|BW661576
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|193434366|gb|FK401092.1|FK401092
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|31308156|gb|CD393359.1|CD393359
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAACAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|6481581|gb|AW200852.1|AW200852
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCEST: gi|11274645|gb|BF324982.1|BF324982
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGC
EST: A-TGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|10254604|gb|BE822370.1|BE822370
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|7692748|gb|AW760848.1|AW760848
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|21600493|gb|BQ610824.1|BQ610824
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|254348332|gb|GR852011.1|GR852011
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|58015407|gb|CX702149.1|CX702149
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|193405196|gb|FK372573.1|FK372573
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: -TTGACTCCGAAACTGGAGCAGTTATCATGGAACCTA-TCATCTAAATGT GTATGAGCAACTGAATAGACCATACCAAGGCCCTTAACGGACGCACTTACAEST: gi|5761286|gb|AI966649.1|AI966649
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGA-TAGACCATACCAAGGCCCTTAACGGACGCACTTACA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|12773923|gb|BG238850.1|BG238850
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|193575523|gb|FK528016.1|FK528016
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAEST: gi|193455465|gb|FK419764.1|FK419764
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
EST: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGT GTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
genomic: ATTGACTCCGAAACTGGAGCAGTTATCATGGAACCTAATCATCTAAATGTgtaagttaac ... atatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAA
gtttatgttgtgtgtcatcattttcatgaccattaatcttatactatatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAGTTGGTTAGTCAACTTCTGGAACATGCACAAGCTCAAACAACACGATGA
cattaat putative branch site (score: 3)
attaatcttatactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaacattgattattgactcaatagataagggcgtttatagcttcctactgtattgtaccattctgactcactatgtagaccacattcttctgtttatgttgtgtgtcatcattttcatgaccattaatcttatactatatctgcagGTATGAGCAACTGATAGACCATACCAAGGCCCTTAACGGACGCACTTACAAGTTGGTTAGTCAACTTCTGGAACATGCACAAGCTCAAACAACACGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA