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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttatcagtcgggtttggtctgttatttagttatgctataatttaggaatactcatttttaaatcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACGCAAACATGAGAGGAAAGACCACTTTGATTCCATGTTCTCATCTCTAATT

Basic information

species Glycine max
transcript GLYMA10G12350.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208312400|gb|GE110336.1|GE110336
EST:     AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA                         ATCATCAAAGAAGCAACCAGAAAAAGAGC
genomic: AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAAgtaagtttat ... tcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGC
EST: gi|151412912|gb|EV282724.1|EV282724
EST:     AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAAGAGGGCAAA                         ATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
genomic: AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAAgtaagtttat ... tcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
EST: gi|151396151|gb|EV266028.1|EV266028
EST:     AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA                         ATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
genomic: AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAAgtaagtttat ... tcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
EST: gi|41145363|gb|CK605574.1|CK605574
EST:     AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA                         ATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
genomic: AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAAgtaagtttat ... tcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
EST: gi|193314092|gb|FK282511.1|FK282511
EST:     AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA                         ATCATCAAAGAAGCAACCAGAAAA-GAGCTTTATGCTATCATATCACAACG
genomic: AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAAgtaagtttat ... tcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
EST: gi|151407863|gb|EV277678.1|EV277678
EST:     AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA                         ATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
genomic: AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAAgtaagtttat ... tcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
EST: gi|207748632|gb|GD720413.1|GD720413
EST:     AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA                         ATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
genomic: AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAAgtaagtttat ... tcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
EST: gi|16346108|gb|BI971703.1|BI971703
EST:     AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAA                         ATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG
genomic: AAAATATCAGAAATCAAGCCACCAACTAGTCCCTTAAGAAGGAGGGCAAAgtaagtttat ... tcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttatttagttatgctataatttaggaatactcatttttaaatcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACGCAAACATGAGAGGAAAGACCACTTTGATTCCATGTTCTCATCTCTAATT
                                             tcttctac  CT-rich tract
                  tataatttaggaatac  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtttatcagtcgggtttggtctgttatttagttatgctataatttaggaatactcatttttaaatcttctacagATCATCAAAGAAGCAACCAGAAAAAGAGCTTTATGCTATCATATCACAACGCAAACATGAGAGGAAAGACCACTTTGATTCCATGTTCTCATCTCTAATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA