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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttccaaataagaatttttataagattttttgttaatatttcaatgataatctccgatatgtttctctgccttcattcggtcttagttaacctctaattgcataatgctacattgtagGAAAGTTACTGAAGGACATTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAA

Basic information

species Glycine max
transcript GLYMA10G10990.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10990.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 7
gttggttccaaataagaatt-tttataagattttttgttaatatttcaatgataatctccgatatgtttctctgccttcattcggtcttagttaacctctaa-ttgcataatgctacattgtagGAAAGTTACTGAAGGACATTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAA
    ||   | | || |||   ||||   | | |    ||   |   || || ||        || |||  |     |  ||  ||   |||  || |  || ||| ||  ||||    | |||| ||| |  | || |        ||||| ||||||||||| || ||||||||||| || || || |||||||| |||||||||||||||||||| |||||
----gtaagagaaaacaatgacttatgtaactgtcgaatagcttcctaaagaaaa-----agaatattttacaaatcttgttttgta--agtgtacttaaaacttgtattttgctgtgctttagGGAAGCTGTTAAAAGGAGAAAAGCTTCCTAAAGAAGAAGAAAATTTCCAGAAAGTGTACGTCAAGGCTCCATCATTTCTTTCAATTCACATGGGTGTTAA

upper sequence: GLYMA10G10990.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 7
gttggttccaaataa-------gaatttttataagattttttgttaatatttcaatgataatctccgatatgtttctctgcc--ttcattcggtc-ttagttaacctctaattgcataatgctacattgtagGAAAGTTACTGAAGGACATTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAA
||| ||||   |          | || ||||| || | |||||  ||  || |     |  | | |  |    | || |  |  |||  || ||  ||| ||||||   || |  | | |  || |||| ||||||| |  | ||||       |||||| |||||||| | |||||| || || || |||||||| || ||||| |||||||| |||||||||||||||||
gttagttctgcaaggatcttttggatgtttatgagttattttgccaa-gttcctgccttgttgtaccttgcactgctatatcagttctctcagtaattaattaacca--aactaaaaattcatatattgcagGAAAGCTTTTAAAGGGTGAAGAACTTCCAAAAGAAGAGGTGAACTTTCAAAAGGTCTATGTTAAGGCCCCATCATTTCTTTCCATTCACATGGGGGTTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctgccttcattcggtcttagttaacctctaattgcataatgctacattgtagGAAAGTTACTGAAGGACATTCCACTTCCGAAAGAAGAAGAGAACTTCCAGAAAGTTTATGTTAAAGCTCCATCTTTTCTTTCAATTCACATGGGGGTTAA
                            ctctaat  putative branch site (score: 3)
                   ttagttaa  TA-rich tract