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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatttataatgttgctgatatgcactgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG

Basic information

species Glycine max
transcript GLYMA10G10000.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10000.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os07g47580.1 (Oryza sativa), 3'ss of exon 7
gtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatttataatgttgctgatatgcac-tgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
                                                                        ||| |  | ||   ||||  |  ||| ||  ||||   | ||||  || |||   |  |  | | |    | || ||||||     ||      |    ||||||||||| || |||||||||||||| || || |||||||| |||||||| ||||
------------------------------------------------------------------agcagattgctg-gaaccacttta--acattgttgg-atgcttgtcatgttcatttagacatcctgcttttacctgt-tggtgcttacagactt------tatcttttcagGTGAACGTTAGTGAACTTGGTCTGGTAACCCCTGCTGGAAAAGTTGTTTGGG

upper sequence: GLYMA10G10000.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G174204_T01 (Zea mays), 3'ss of exon 7
gtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaagg--catttgagttgatatgcactgatttataatgttgctgatatgcactgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
              |||||      ||| | |    |  || |   || |       | ||  |    | | || || ||  ||  | |   | |  || |   | |  |        |      |  |     |||| ||| ||   |||| |         ||| |    |||||||| ||||||||||| |||||||| || || || ||||| |||||||| ||||
-------------gtactccaa-gcatttttaccagttattgtagtcaatacttttgtgtagtgactgtattaggtgctagccatggttcactgagattacctctttatatcaccccctcccctcccct----ctatcgaaattgc--tgctcaca-------atagtattctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGG

upper sequence: GLYMA10G10000.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G009876_T01 (Zea mays), 3'ss of exon 7
gtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatt-tataatgttgctgatatgcactgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
                         || | ||    |  || || ||| | |    || ||   |   || || | |    | | | | ||| |  ||   |  |||   |  ||    | |  || |       || ||||| || ||||||         ||  |    |||||||| ||||||||||| |||||||| || || || ||||| |||||||| ||||
-----------------------gtatgccaagcatt--tttttaccatttt----atgtagtac-cctgtgtagctgactagtaactatattagtttttcgtcatggtttactgggattatctctttgtacccctcgaaaat-tgctgcttaca-------atggtcttctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGG

upper sequence: GLYMA10G10000.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G06360.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatttctgctgtttactcttctaaattctaattgatggttatttccactctcacaatttaaggcatttgagttgatatgcactgatttataatgttgctgatatgcactgatgtatatgtagctgtaatattatcaaaaatgtgttgcttatttctt-tgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
                                                                                              |||  |       |    |   |||  || ||| || ||||   |||  ||    | | |   | |||  |  |   |||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||| ||||
----------------------------------------------------------------------------------------------gttagtccccaagatctttacgtattaagttgtcat-ttatgctaaagttgcaaataactcaatatgcgaatggatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208320447|gb|GE122462.1|GE122462
EST:     GGGGAACTATAATTGAG                         GTGAATGTCAGNGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|14258675|gb|BG881583.1|BG881583
EST:     GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|207682562|gb|GD664877.1|GD664877
EST:     GGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|31459692|gb|CD401720.1|CD401720
EST:     GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|22931857|gb|BU548996.1|BU548996
EST:     GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|151408011|gb|EV277826.1|EV277826
EST:     GCCCTATGTATACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|23730169|gb|BU763189.1|BU763189
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttctgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgtaatattatcaaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
     taatattatcaaaaat  TA-rich tract