Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcatttaaaataaatctcagtatggtgattgtgatttgtcaaatgcatttactataccaatggcaatgggttttattttacactcatttttgtcaatctttttatgcctgtagGTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTTTGAGAAGACATGTTAGCGTTGTTTCTCAAGATATA

Basic information

species Glycine max
transcript GLYMA10G08560.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345933|gb|GR859580.1|GR859580
EST:     GAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTG                         GTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTT
genomic: GAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTGgtgagtcatt ... atgcctgtagGTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTT
EST: gi|254345934|gb|GR859581.1|GR859581
EST:     GAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTG                         GTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTT
genomic: GAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTGgtgagtcatt ... atgcctgtagGTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggcaatgggttttattttacactcatttttgtcaatctttttatgcctgtagGTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTTTGAGAAGACATGTTAGCGTTGTTTCTCAAGATATA
                                      tctttttat  CT-rich tract
            ttttattttacactca  TA-rich tract