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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactgagaattatcaatttctgcctgtatcctaaataaaaatatggaaatgttggcttttagaacttgaattatgaagttgaaattagtataacacaattgtttgtcatctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAG

Basic information

species Glycine max
transcript GLYMA10G05870.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05870.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G09740.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagaactgagaattatcaatttctgcctgtatcctaaataaaaatatggaaatgttggcttttagaacttgaattatgaagttgaaattagtataacacaattgtttgtcatctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAG
                                    || |  | |  |   |||  |    ||        ||  ||    ||||| |||  | |        ||  |   | |  | |||||||||||  ||| |||| || |||||||| || ||||||||||||||||| || |||||||||
-----------------------------------gtagaagacaccacccaaac-tccatttcctttctctgtgttggttagttgtaatctgaac-------tttctgaacttgctcacagGTGGACAGAGCAACCTCCGATCTTAAGAACACCAATGTTAGACTTAAAGATACCGTGAACCAG

upper sequence: GLYMA10G05870.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0040g02130.t01 (Vitis vinifera), 3'ss of exon 6
gtaagaactgagaattatcaatttctgcctgtatcctaaataaaaatatggaaatgttggcttttagaacttgaattatgaagttgaaattagtataacacaattgtttgtcatctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAG
              | || |||||         |   ||||  |||  |   |||| ||     | | | |   |||||  |     |||||  | || |    | |||      ||||||||||||||| ||| |  ||||||| |||||||| |||||||||||||| ||||| || ||||||
-------------gtgataaattt---------tgtcaaattcaaaatttttaatgctgaacggttggaatcttattatttatc---aattatcaaaata----tttttcatgcgtttacagGTGGACAAAGCAACAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26048180|gb|CA784745.1|CA784745
EST:     GAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAG                         GTGGACAAGGCATCCTCTGACCTT
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAGgtaagaactg ... atctttacagGTGGACAAGGCATCCTCTGACCTT
EST: gi|18730524|gb|BM525925.1|BM525925
EST:     GAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAG                         GTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGAC
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAGgtaagaactg ... atctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGAC
EST: gi|16346378|gb|BI971973.1|BI971973
EST:     GAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAG                         GTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGAC
genomic: GAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAGgtaagaactg ... atctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttgaattatgaagttgaaattagtataacacaattgtttgtcatctttacagGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAG
                         gtataac  putative branch site (score: 3)
                                           tcatcttt  putative PPT
                ttgaaattagtataa  TA-rich tract