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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagaattatgagtgtctgattctaatgctttcaaatggtcttccaaatattttaatgaattgtgcagattaatgttttgctaacattttggtgatttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCACTGAAAGCTACTCTCTCTGGGCTTCCAGACCGTGTTTTTATGAAATTAG

Basic information

species Glycine max
transcript GLYMA10G03740.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16342973|gb|BI968568.1|BI968568
EST:     TACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGC-AANNNNANGCCA
genomic: TACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|192299302|gb|FG988702.1|FG988702
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|11273725|gb|BF324101.1|BF324101
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAA                         GCTGTTCAACAATATGGAGATATTGACATCTTCACTGCCAATGTTACGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: CTGTATTTTCTCAACCACCAATTGGACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     GACAAGTTGGTCTTACTGAGGAACAG                         GCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA
genomic: GACAAGTTGGTCTTACTGAGGAACAGgtgagagaat ... atttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttaatgaattgtgcagattaatgttttgctaacattttggtgatttgcacagGCTGTACAACAATATGGAGATATTGACATCTTCACTGCAAATTTTAGGCCACTGAAAGCTACTCTCTCTGGGCTTCCAGACCGTGTTTTTATGAAATTAG
                             tgctaac  putative branch site (score: 1)
                   attaatgtttt  TA-rich tract