1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagcctgtgttagatctgttaatgaatttgatgagttttgaatggagcttgtatttgattgattaactcccgttttgcagGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGATGAATGGTTGTCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAG
species | Glycine max |
transcript | GLYMA10G02700.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTGCTAAAATTTTTTGTCGATAAAGTAACAGGTGTAAGCAAATGTTTTG GGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGAEST: gi|58022859|gb|CX709600.1|CX709600
genomic: AGTGCTAAAA-TTTTTGTCGATAAAGTAACAGGTGTAAGCAAATGTTTTGgtaagcctgt ... cgttttgcagGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGA
EST: GAGTGCTAAAATTTTTGTCGATAAAGTAACAGGTGTAAGCAAATGTTTTG GGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGAEST: gi|58016439|gb|CX703181.1|CX703181
genomic: GAGTGCTAAAATTTTTGTCGATAAAGTAACAGGTGTAAGCAAATGTTTTGgtaagcctgt ... cgttttgcagGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGA
EST: GAGTGCTAAAATTTTTGTCGATAAAGTAACAGGTGTAAGCAAATGTTTTG GGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGA
genomic: GAGTGCTAAAATTTTTGTCGATAAAGTAACAGGTGTAAGCAAATGTTTTGgtaagcctgt ... cgttttgcagGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGA
atttgatgagttttgaatggagcttgtatttgattgattaactcccgttttgcagGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGATGAATGGTTGTCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAG
gattaac putative branch site (score: 2)
ctcccgtttt CT-rich tract
tatttgattgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcctgtgttagatctgttaatgaatttgatgagttttgaatggagcttgtatttgattgattaactcccgttttgcagGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGATGAATGGTTGTCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT