Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttacataattctcgcttatgcttccacttttccctttttgtaatagagaagtgatattttatatgattcctgtgtagGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCGAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGC

Basic information

species Glycine max
transcript GLYMA10G02400.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02400.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 7
--------gtagttacataattctcgcttatgcttccactttt---ccctttttgtaatagagaagtgatattttatatgattcctgtgtagGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCGAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGC
            ||   |   |   || | |||||    ||||   |  || ||  | |  | |  | | | |  | |||| | || | ||||||| |||||||| ||||| ||||||   ||||||||||| || ||||||  |||||| || || ||||| ||||||||   ||||||||| 
gtaccaccaccttttttttcatgctgcctgtgctttattttttaatcatttctttgattctatatctaacactcca-atgagttctttatagGTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208161560|gb|GD961368.1|GD961368
EST:     TTCTGACCTCTCATCAGTGTCTCCACGAATATTGTTATCTGGTCCTGCAG                         GTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCGAAGCATTTTG
genomic: TTCTGACCTCTCATCAGTGTCTCCACGAATATTGTTATCTGGTCCTGCAGgtagttacat ... tcctgtgtagGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCGAAGCATTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccacttttccctttttgtaatagagaagtgatattttatatgattcctgtgtagGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCGAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGC
                                            ttcctgt  CT-rich tract
                             tgatattttatatgat  TA-rich tract