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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttccaatatactaactattgaatacgtggtttcttccaccattcccttgaatgattaattcacatagatgcatccttttgctaaatttaattgtttcttttaccaaaatttaattttcagCATGCTGCTGATGAGAAGTATAATTTTGAGCGTCTATCACAGTCAACCATCTTGAACCAACAACCTCTTCTTAG

Basic information

species Glycine max
transcript GLYMA10G02390.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02390.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g37920.1 (Oryza sativa), 3'ss of exon 6
----------gtaatttcca-atatactaactattgaatacgtggtttcttccaccattcccttgaatgattaattcacat-----agatgcatccttttgctaaatttaattgtttcttttaccaaaatttaattttcagCATGCTGCTGATGAGAAGTATAATTTTGAGCGTCTATCACAGTCAACCATCTTGAACCAACAACCTCTTCTTAG
           || | |  | |||| |||   |||||   | | || |  |  |     ||| || ||   |   |  ||      |||| | |  | | |  |  | |  |  ||  | ||       | |  ||   |||||||||||||||||||||| || ||||||   || ||||||||||| |  || |||  ||| ||||| |||  
gtatctctctatagtctatacatattctattaattgatgtcatagtattgtataaa---cccctggatatctgggttgcaccttcaagataccttatgtagtcatgtctggtgattaatgtttttt---tcttcttactagCATGCTGCTGATGAGAAGTACAACTTTGAGAACCTTTCACAGTCAACAACTTTAAACATACAGCCTCTCCTTCA

upper sequence: GLYMA10G02390.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0005g00220.t01 (Vitis vinifera), 3'ss of exon 8
gtaatttccaatatactaactattgaatacg-tggtttcttccaccattcccttgaatgattaattcacatagatgcatccttttgctaaatttaattgtttcttttaccaaaatttaattttcagCATGCTGCTGATGAGAAGTATAATTTTGAGCGTCTATCACAGTCAACCATCTTGAACCAACAACCTCTTCTTAG
            |   ||  |||   ||| | ||| |   | ||  |||  |  || |  ||||||         ||||  ||||  | |   | |   | |   |        ||   ||||||||||||||| ||||| || || |||||||||| |||  |||| |||||  |||||||||| || ||| | ||| |
------------agtttacatatcacatatggtgggtatgttcaa-atttgccagatt--ttaatt---------gcatgtttttcatgagaatcaaaatcttaata--tgggtttctcttttcagCATGCTGCAGATGAAAAATACAATTTTGAGCATCTGGCACAATCAACTGTCTTGAACCAGCAGCCTTTGCTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatgcatccttttgctaaatttaattgtttcttttaccaaaatttaattttcagCATGCTGCTGATGAGAAGTATAATTTTGAGCGTCTATCACAGTCAACCATCTTGAACCAACAACCTCTTCTTAG
                                                ttttc  CT-rich tract
                taaatttaattgtttc  TA-rich tract