1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taaacaaagaatgtaaaagagtgccaccagaaaaagtgttgttagatttcctattcttgttagttgaacttgattttttttttaatttttgtaattttagGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGATCATCTCTAC
species | Glycine max |
transcript | GLYMA10G02130.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAG GTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGEST: gi|51336243|gb|CO980109.1|CO980109
genomic: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGgttacaaaat ... gtaattttagGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGG
EST: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAG GTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGEST: gi|8402468|gb|BE058102.1|BE058102
genomic: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGgttacaaaat ... gtaattttagGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGG
EST: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAG GTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGEST: gi|9439791|gb|BE440305.1|BE440305
genomic: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGgttacaaaat ... gtaattttagGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGG
EST: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAG GTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGEST: gi|26058641|gb|CA801555.1|CA801555
genomic: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGgttacaaaat ... gtaattttagGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGG
EST: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAG GTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGG
genomic: GTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGgttacaaaat ... gtaattttagGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGG
atttcctattcttgttagttgaacttgattttttttttaatttttgtaattttagGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGATCATCTCTAC
ttttaat putative branch site (score: 3)
tttttgt CT-rich tract
ttagttgaacttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacaaagaatgtaaaagagtgccaccagaaaaagtgttgttagatttcctattcttgttagttgaacttgattttttttttaatttttgtaattttagGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGATCATCTCTAC
-aaacaaa
- - - - gaatgta
- - - - - - - - - - -tgccacc
- - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - tgttgtt