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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcctaacttgccctctctatttgctgatatgcactgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG

Basic information

species Glycine max
transcript GLYMA10G00490.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00490.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os07g47580.1 (Oryza sativa), 3'ss of exon 7
gtatttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcctaacttgccctctctatttgctgatatgcac-tgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
                                                                      ||  |||         | || |    ||| ||  ||||   | |||| | || |||   |  |  | | |     || ||||||     ||      |    ||||||||||| || |||||||||||||| || || |||||||| |||||||| ||||
----------------------------------------------------------------------agcagattgctggaaccactttaacattgttgg-atgcttgtcatgt-tcatttagacatcctgcttttacctgttggtgcttacagactt------tatcttttcagGTGAACGTTAGTGAACTTGGTCTGGTAACCCCTGCTGGAAAAGTTGTTTGGG

upper sequence: GLYMA10G00490.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G174204_T01 (Zea mays), 3'ss of exon 7
gtatttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcctaacttgccctctctatttgctgatatgcactgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
||| |       |||   |   | | || || |  ||  ||  ||    | | ||  |   |||       | |   | |   |  |      ||  |  | ||||          |     |  |        |||| |||| || |||| |         ||| |    |||||||| ||||||||||| |||||||| || || || ||||| |||||||| ||||
gtactccaagcatttttaccagtta-ttgtagtcaatactt--ttgtgtagtgactgtattaggt------gctagccatggttcactgagattacctctttatat---------caccccctcccctcccctctatcgaaat-tgctgctcaca-------atagtattctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGG

upper sequence: GLYMA10G00490.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G009876_T01 (Zea mays), 3'ss of exon 7
gtatttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcctaacttgccctctctatttgctgatatgcactgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
                                 ||      ||||    ||       || ||     || || | |    | |  |  | |   |||   |  |||   |  ||   | | |  || |       || |||  || ||||||         ||  |    |||||||| ||||||||||| |||||||| || || || ||||| |||||||| ||||
------------------------------gtatgccaagcatttttttaccattttatgtagtaccctgtgtagctgactagtaactatattagtttttcgtcatggtttactggg-attatctctttgtacccctcgaaaattgctgcttaca-------atggtcttctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGG

upper sequence: GLYMA10G00490.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G06360.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatttatgctgtttcctcttctaaattctaattgatggttatttccacactcacaattgaaggcatttgagttgatcctaacttgccctctctatttgctgatatgcactgatgtataatgtagctgtaatattatcaaaatgtgttgcttatttctt-tgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
                                                                                             || |  |  | ||    | | |||| |   || ||| || |   | |||  ||    | | |   | |||  |  |   |||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||| ||||
-------------------------------------------------------------------------------------------gttagtccccaagatct--ttacgtatta---agttgtcatttatgctaaagttgcaaataactcaatatgcgaatggatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192333081|gb|FK026410.1|FK026410
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|17963424|gb|BM270173.1|BM270173
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|17400258|gb|BM177032.1|BM177032
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|26043857|gb|CA782197.1|CA782197
EST:     GCCCTATGTACACCTCTCTTGGTGTCTTTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|31459134|gb|CD401162.1|CD401162
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|209725840|gb|BW654703.1|BW654703
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGT-GTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|120530814|gb|EH258947.1|EH258947
EST:     GCC-TATGTACACCTCTCTTGGTGTCATTACCAGG--A-CTATA-T-GAG                         GTGA-TGTCA-TGAACT-GGTCTTGTC-CACC
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACC
EST: gi|22932705|gb|BU549844.1|BU549844
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|192329668|gb|FK022934.1|FK022934
EST:     GTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
EST: gi|209725841|gb|BW654704.1|BW654704
EST:     GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAG                         GTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG
genomic: GCCCTATGTACACCTCTCTTGGTGTCATTACCAGGGGAACTATAATTGAGgtatttatgc ... gcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctgtaatattatcaaaatgtgttgcttatttctttgcatactgcaatttcagGTGAATGTCAGTGAACTTGGTCTTGTCACACCTGCTGGGAAAGTTGTGTGGG
      taatattatcaaaatg  TA-rich tract