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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC

Basic information

species Glycine max
transcript GLYMA09G41510.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 6
gtaggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC
                          | | || |    |  ||||      ||  |        || | || |||  ||| ||||||     | ||| ||   | || |||    | | ||||  |||||||| || || ||||| ||||| |||||| |  | ||||| ||||| ||||| || ||  ||||||||||| |||||||||| || ||||||||||| ||
-------------------------gtactga-tagtcattttaatcacaattaatgccagtgatcaattgctttctcattcattttc----tttta-atctgttatgattcaacttt-cactacgcagATCTATTCCAAAGACTTTTCAGGCAGGATCTTTTGGTTGCTAGTCTCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCC

upper sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 7
gtaggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC
                       | |||         | | |||  ||   |     |      || | || |||  ||| ||||||     | ||| ||   | || |||    | | ||||  |||||||| || || ||||| ||||| |||||| |  | ||||| ||||| ||||| || ||  ||||||||||| |||||||||| || ||||||||||| ||
----------------------gtactgatagtcgttttagttacaattaatgccagtga----tcaattgctttctcattcattttc----tttta-atctgttatgattcaacttt-cactgcgcagATCTATTCCAAAGACTTTTCAGGCAGGATCTTTTGGTTGCTAGTCTCTTTCGCAACTTCTTACTTGCTGAGAGAATCATGCGGTCCGCAAATTGTTCCCC

upper sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 7
gta-ggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC
||| ||  ||  |  |    | | || ||  ||   |  ||| ||       || ||     ||    | | | |        ||||| ||| | | | |    |             | |||| ||||||||| || || || || ||||| || ||| | |||||||| || || ||||| || ||  | ||||||||| ||||||||||||| ||||||||||||||
gtatggcgtctgcgatgtata-ctttttggggatcaagaaaactagagaaaattattcaa--attcaaaataaatgtcagcttattttgggtttatgatacaagt-------------ttcactgtgcagATCTGTTCCAAAGGCTTTTCAGGCAAGATCTTCTTGTTGCTAGCCTCTTTCGTAACTTCTTGCTTGCTGAGAGAATCATGCGATCAGCAAATTGTTCTCC

upper sequence: GLYMA09G41510.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 7
gtaggtctcaaccctccccatccttctgccgacttactaaattaacatggtttttttttccatctccagtgatttagcatgcatttttggtatc-ttacattgat-cattattttgttctgcactctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC
                    |  ||     | |||||| | || |    |  |       || ||      ||||   ||   |||||  | || ||||  || |  ||   | | |  |     |||||||||||||||||||| ||||||| || ||  || | ||||| |||||||||||||||||  ||||||||||| |||| |||||||||||||| ||||| ||
-------------------gtaatttaattggcttactgattttatgcagcatgagcaatcagctgtta-aatttttaatttgtttttattctccttacggtggtatatgcatatttattttgtgctgcagATCTTTTTCAGAGATTGTTCAGGCAAGACCTGTTAGTTGCCAGTCTGTTTCGAAATTTCTTACTTGCTGAGAGAATTATGCGATCTGCAAACTGTTCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcatgcatttttggtatcttacattgatcattattttgttctgcactctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCC
                        attgatcattatttt  TA-rich tract