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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataataatggtcttgggatcttcccatgtacattttagcattttccggctgattcacttacagtgatgttttcattttcgtctctttagGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG

Basic information

species Glycine max
transcript GLYMA09G41330.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41330.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 3'ss of exon 8
----------------gtataataatgg---tcttgggatcttcccatgtacattttagcattttccggctgattcacttacagtgatgttttcattttcgtctctttagGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG
                || |  |  | |   ||||||| |||||||   |  ||||||   || ||| |     |||||||    ||  | ||   | ||    ||| |||| ||||||||||| || ||||| |||||||||||||| || || |||||||||||| |||| |||||||||||
gtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcccaacttcagGTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254334605|gb|GR844390.1|GR844390
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCAAG                         GTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACT
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCAAGgtataataat ... gtctctttagGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACT
EST: gi|6951767|gb|AW423835.1|AW423835
EST:     TAGTCTTGCTTATATTTGTCTCCGGAAAAATTGTTCTGACAGGAGCCAAG                         GTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACT
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCAAGgtataataat ... gtctctttagGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACT
EST: gi|6915664|gb|AW397194.1|AW397194
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCAAG                         GTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACT
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCAAGgtataataat ... gtctctttagGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagcattttccggctgattcacttacagtgatgttttcattttcgtctctttagGTTAGAGATGAGACTTACACAGCTTTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG
                    cacttac  putative branch site (score: 2)
                                tgttttcattttcgtc  putative PPT
                                  ttttcatttt  TA-rich tract