Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgtttctgcatgtgcagttggtttcctggcttctttctacatactaaatgtttaagtaatgattaacatatgttaaacttgtttgttcttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCA

Basic information

species Glycine max
transcript GLYMA09G41330.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G41330.1 (Glycine max), 3'ss of exon 7
lower sequence: EDP05450 (Chlamydomonas reinhardtii), 3'ss of exon 4
-tgtgtttctgcatgtgcagttggtttcctggcttctttctacatactaaatgtttaagtaatgattaacata-tgttaaacttgtttgttcttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCA
 ||   | | ||  |  |     ||| |    |  | |    ||  |    ||   |  |   |  |  | |   |  |  | |  ||| |||     |||||| || || ||||||||||| || || ||||| ||||||||||| |||||||| ||  |||| || || || || || ||  | || |||||||      
gtgcaatgcggctagcacgcgctgttgcggcacaccatatggca-gcctgttgcccacatcccgtatgccgtggcgccatgcct-cttgctctgccccgtagTACGAGCCCGAGCTGTTTCCGGGCCTCATCTACCGCATGAAGCAGCCCAAGATTGTGCTGCTGATCTTCGTGTCGGGCAAGGTGGTGCTGACAG------

upper sequence: GLYMA09G41330.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S246_34V6.1 (Physcomitrella patens), 3'ss of exon 6
------tgtgtttctgcatgtgcagttggtttcctggcttctttctacatactaaatgtttaagtaatgattaacatatgttaaacttgtttgttc-ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCA
      |    |  | ||     || || |||    || |    |||  |   | || ||  | |  || || ||  |||    |  |||| ||||  |||| | |||||||||||||| |||| |||||  | || ||| | |||||||| |||||||| || |||||||| || || |||||||| ||||| || || || || |
agaatttaaaatgttacaaaatgagctgctttaagtgcctaaa-ctatctttcagatctt--attggtgtttgacccatg----aactgttggttcactgtttgcagTATGAACCAGAGTTGTTCCCAGGGTTGATATATAGAATGAAGCAGCCCAAGATTGTATTGCTTATCTTCGTGTCTGGAAAGATTGTCCTTACTGGTGCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336235|gb|GR842414.1|GR842414
EST:     TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATAGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCCGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
EST: gi|254334604|gb|GR844389.1|GR844389
EST:     TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
EST: gi|6951767|gb|AW423835.1|AW423835
EST:     CCATTCGACTTGAGGGTCTTGCCTATTCCCATAGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCCGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: CCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
EST: gi|19270744|gb|BM887000.1|BM887000
EST:     CCCCATTCGACTTGAGGGTCTTGCCTATTCC-ATTAGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCCGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: CCCCATTCGACTTGAGGGTCTTGCCTATTCCCATG-GTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
EST: gi|6915664|gb|AW397194.1|AW397194
EST:     TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
EST: gi|21887668|gb|BQ740881.1|BQ740881
EST:     TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATAGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCCGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
EST: gi|254334605|gb|GR844390.1|GR844390
EST:     TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGT                         TATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG
genomic: TCCCCATTCGACTTGAGGGTCTTGCCTATTCCCATGGTGCTTTCTCAAGTgtaagtgtga ... ttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaatgtttaagtaatgattaacatatgttaaacttgtttgttcttgttggtagTATGAACCAGAGCTGTTTCCAGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACAGGAGCCA
                                      tttgttctt  CT-rich tract
       tttaagtaatgattaa  TA-rich tract