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...ttgtgttagggaggttgggaagtttttctacttacgttaatttcaatttttttatgggtatcatttattcatttttgtgggaatttgaatttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGCCCAAGGTGGAAGGGCTTACTCGGCTTGTCTT
species | Glycine max |
transcript | GLYMA09G41070.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAG CTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGEST: gi|6724792|gb|AW309191.1|AW309191
genomic: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGgtaaattcat ... ttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAG
EST: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAG CTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGEST: gi|208177331|gb|GD973924.1|GD973924
genomic: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGgtaaattcat ... ttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAG
EST: AGTTTTTTGGAGATGGATATACCCACTGTGAAG CTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGEST: gi|51341493|gb|CO982810.1|CO982810
genomic: AGTTTTTTGGAGATGGATATACCCACTGTGAAGgtaaattcat ... ttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAG
EST: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAG CTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGEST: gi|207732297|gb|GD706272.1|GD706272
genomic: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGgtaaattcat ... ttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAG
EST: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAG CTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAEST: gi|16347036|gb|BI972631.1|BI972631
genomic: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGgtaaattcat ... ttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGA
EST: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAG CTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGEST: gi|10255066|gb|BE822832.1|BE822832
genomic: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGgtaaattcat ... ttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAG
EST: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAG CTTCAGGATCNNNGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGEST: gi|151407222|gb|EV277037.1|EV277037
genomic: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGgtaaattcat ... ttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAG
EST: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAGG CTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAG
genomic: TATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGgtaaattcat ... ttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAG
atttttttatgggtatcatttattcatttttgtgggaatttgaatttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGCCCAAGGTGGAAGGGCTTACTCGGCTTGTCTT
tttctt CT-rich tract
tatcatttattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgttagggaggttgggaagtttttctacttacgttaatttcaatttttttatgggtatcatttattcatttttgtgggaatttgaatttcttaacagCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGCCCAAGGTGGAAGGGCTTACTCGGCTTGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - ggttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg