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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttattttcgtttttccttatcaatttgaaagttgtacaatagtttgtgcctgagcttgtgatattattgtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT

Basic information

species Glycine max
transcript GLYMA09G40150.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40150.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os10g37740.1 (Oryza sativa), 3'ss of exon 7
gtaagtttattttcgtttttccttatcaatttgaaagttgtacaatagtttgtgcctgagcttgtgatattattgtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT
||| | || || || |  |  | | |  |||     |||| |||      |||   |||   ||       | |    |  |||| ||||| ||||| |||||||| || || ||||||||||||||||| ||||| ||||| |||||||| || ||||| || || || || |||||||| |
gtatgcttcttgtcctgctagcatgttgattctgt-gttgcaca------tgtatttgacaatgcaga--cactccatttcagGTTCCTGGTGAACCTAACATATCATACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACAGAGTATACCACAGCAATTGATATCT

upper sequence: GLYMA09G40150.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G131853_T01 (Zea mays), 3'ss of exon 7
gtaagtttattttcgtttttccttatcaatttgaaagttgtacaatagtttgtgcctgagcttgtgatattattgtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT
       |||  |  | | |  |  |   |||    | || | |      ||    | |    || | ||     |  |  |||| ||||| || || ||||||||||| || ||||||||||||||||| ||||| ||||| |||||||| || || || || || ||||| || ||||| |
------gtatacttctctcttttagtttgtttct--gctgaatatcttcatggatttaataaagtaaaatatccat--ttcagGTCCCTGGTGAGCCTAACATATCGTACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACGGAGTATACCACTGCGATCGATATCT

upper sequence: GLYMA09G40150.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G109624_T01 (Zea mays), 3'ss of exon 7
gtaagtttattttcgtttttccttatcaatttgaaa--gttgtacaatagtttgtgcctgagcttgtgatattattgtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT
           | |  || ||  | | | ||||     |||| | |      ||    | |    || | ||     |  |  |||| ||||| || || ||||||||||| || ||||||||||||||||| ||||| ||||| |||||||| || || || || || ||||| || ||||| |
----------gtacacttctctcttttagtttgttcctgttgaatatcttcatggatttaataaagtaaaatatccat--ttcagGTCCCTGGTGAGCCTAACATATCGTACATTTGCTCGCGGTATTATAGGGCTCCTGAACTAATATTTGGAGCTACGGAGTATACCACTGCAATCGATATCT

upper sequence: GLYMA09G40150.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G00720.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtttattttcgtttttccttatcaa--tttgaaagttgtacaatagtttgtgcctgagcttgtgatattatt-gtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT
       ||| ||| |||||  ||    |  | |   || ||    ||  ||||            | | |   || | |    |||| || || ||||| |||||||| ||||||||||| ||||| || || || ||||||||||||||||| || ||||| || || | ||| ||||| || |
------gtatgttcatttttttttgatgagttcttggagatgagttatcatttgaataatgatggctaacaccctttgcgtctcagGTACCCGGTGAACCTAACATATCCTATATATGCTCCCGGTACTACAGGGCCCCAGAACTTATATTTGGGGCGACAGAGTATACCAATGCCATTGACATGT

upper sequence: GLYMA09G40150.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 3'ss of exon 7
gtaagtttattttcgtttttc---cttatcaatttgaaagttgtacaatagtttgtgcctgagcttgtgatattattgtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT
||| ||||||| || |  ||     || ||||    ||  |  || |  || ||     ||| |||   || ||         |||||||| || ||||| |||||||| ||||| |||||  |||||||||| ||||||||||| || ||||| || |||||||| |||||||| |||||||| |
gtatgtttattatcttccttggaatttttcaacactaatttgctatagcaggtt----ttgaactt--cat-ttgcctgatggtagGTGCCAGGTGAACCAAACATATCATATATTTGCTCAAGGTATTATAGGGCTCCAGAACTGATCTTTGGGGCTACAGAATATACAACTGCCATTGATATGT

upper sequence: GLYMA09G40150.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 7
gtaagtttattttcgtttttccttatcaatttgaaagttgtacaatagtttgtgcctgagcttgtgatattattgtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT
||  ||   |     |     | |   ||||    || ||        ||  ||| |    | |  | |  |       | |||||   || || ||||||||||||||||| || || || |||||  | ||||| |||||||||||||||||||| || |||||||| || || || || |
gtgggtgcttacaaataggatccttggaattcagcagctgatttgcgtttcctgcttttcttggcaaaacaa-------acagGTGAAAGGAGAGCCCAACATATCGTATATCTGTTCCCGTTATTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCT

upper sequence: GLYMA09G40150.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 7
gtaagtttattttcgtttttccttatcaatttgaaagttgtacaatagtttgtgcctgagcttgtgatattattgtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT
||  ||   |     |     | |   ||||    || ||        ||  ||| |   || |  | |        | | |||||   || || ||||||||||||||||| || || || || ||  | ||||| |||||||||||||||||||| || |||||||| || || || || |
gtgggtgcttacaaataggatccttggaattcagcagctgatttgcgtttcctgcttttcctggcaaaa--------caacagGTGAAGGGAGAGCCCAACATATCGTATATCTGTTCCCGTTACTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgaaagttgtacaatagtttgtgcctgagcttgtgatattattgtgctatagGTGCCTGGCGAACCCAACATATCGTATATATGCTCGCGGTATTATAGAGCTCCAGAACTTATATTTGGTGCAACAGAATACACAACTGCTATTGATATTT
                                    tgatattatt  TA-rich tract