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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattatttttaaaacatgtttctctcaatgttcagtttcggtattttagtattgagatgattggctaattttttcagTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAG

Basic information

species Glycine max
transcript GLYMA09G39870.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39870.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 7
gtttgtattatt---tttaaaacatgtttctctcaatgttcagtttcggt-attttagtattgagatg-attggctaattttttcagTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAG
|||  | |  ||   | || |||   | ||      | |  | |    || || ||  ||    |||| || ||  |||  | ||||||||||||||| ||||||||||||||||||||||| ||  |||| |||||  ||| ||| |||||||| || ||||| ||||||
gttcatttctttaaatctacaactattgtcatattttatctaatgcatgtcatattgttaactggatggatgggaaaatcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaatgttcagtttcggtattttagtattgagatgattggctaattttttcagTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAG
                                        ggctaat  putative branch site (score: 3)
                                              ttttttc  CT-rich tract
                   tattttagtattga  TA-rich tract