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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtacaacttttgcatcatttatttgactgagaaaataaccacatttgtgctacatgtaatatcatcttttcttttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA

Basic information

species Glycine max
transcript GLYMA09G38640.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18735262|gb|BM528663.1|BM528663
EST:     CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAG                         TCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
genomic: CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGgcaagtacaa ... ttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
EST: gi|18038713|gb|BM307007.1|BM307007
EST:     CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAG                         TCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
genomic: CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGgcaagtacaa ... ttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
EST: gi|8402143|gb|BE057777.1|BE057777
EST:     CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAG                         TCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG
genomic: CTTCAGTTAGGCGCTTCTTTTCAAGATTTTGTACACCAATATTTTTGGAGgcaagtacaa ... ttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagaaaataaccacatttgtgctacatgtaatatcatcttttcttttttatgcagTCTTTTATTTTAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA
    aaataac  putative branch site (score: 2)
                               tatcatcttttctttt  putative PPT
                            taatatcatcttttct  TA-rich tract