1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaatgttgcatttaaggatgttgttttcttcatttcattttatattgtcttattacttgtttaaccaatgttttactctcatgcatttataactactgtagGCATATACAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGAGGCGATACAATTTCAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTC
species | Glycine max |
transcript | GLYMA09G38460.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTGCTGAGATTGGTGTGGCAAGTACCAAG GCATATACAAGTCAAATAGTAGTGGCGGTCATGTTAGCTCTTGCAATAGGAEST: gi|192325841|gb|FK018063.1|FK018063
genomic: GGTGCTGAGATTGGTGTGGCAAGTACCAAGgtaaatgttg ... actactgtagGCATATACAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGA
EST: GTGGTGTTCATATAAATGCTGGTGCTGAGATTGGTGTGGCAAGTACCAAG GCATATACAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGAEST: gi|58025101|gb|CX711842.1|CX711842
genomic: GTGGTGTTCATATAAATGCTGGTGCTGAGATTGGTGTGGCAAGTACCAAGgtaaatgttg ... actactgtagGCATATACAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGA
EST: TGGTGGTTCATATAAATGCTGGTGCTGAGATTGGTGTGCCAAGTTCCAAG GCATATTCAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGA
genomic: TGGT-GTTCATATAAATGCTGGTGCTGAGATTGGTGTGGCAAGTACCAAGgtaaatgttg ... actactgtagGCATATACAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGA
gtcttattacttgtttaaccaatgttttactctcatgcatttataactactgtagGCATATACAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGAGGCGATACAATTTCAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTC
ttataac putative branch site (score: 2)
atttataacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgttgcatttaaggatgttgttttcttcatttcattttatattgtcttattacttgtttaaccaatgttttactctcatgcatttataactactgtagGCATATACAAGTCAAATAGTAGTGATGGTCATGTTAGCTCTTGCAATAGGAGGCGATACAATTTCAAATCAAGCCAGAAGAGAAGCTATCATAGATGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC