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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggccttttacttgtattgattttattttgattctgttaactacaacttgttcattcttgattgtctaatttttaaaactcttaccagTATTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTAGCTATTGGATTTTACTGCCGAGACAAAG

Basic information

species Glycine max
transcript GLYMA09G38000.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38000.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0215g00030.t01 (Vitis vinifera), 3'ss of exon 8
gtaggccttttacttgtattgattttattttgattctgttaactacaacttgttcattcttgattgtctaatttttaaaactcttaccagTATTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTAGCTATTGGATTTTACTGCCGAGACAAAG
          ||  | |  ||  ||||   ||||| ||||  |   | ||||||   || |  || ||| || || || | |    ||||||| ||  | |||||   ||| || || |||||||||||||| || ||||| || ||||||||||||||||
---------gtaagttt-ctggatttagaatgatt-tgttcccgtaagcttgttttctccttgtt-tctcatcttcaatagttgctccagTATCATACGACACATTTGCCTTGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13482239|gb|BG511582.1|BG511582
EST:     TACCATTGCAA                         TATTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTAGCTATTGG
genomic: TACCATTGCAAgtaggccttt ... ctcttaccagTATTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTAGCTATTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttaactacaacttgttcattcttgattgtctaatttttaaaactcttaccagTATTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTAGCTATTGGATTTTACTGCCGAGACAAAG
                                             ctcttacc  CT-rich tract
                        ttgattgtctaatttt  TA-rich tract