1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taaattggtacaagttatttacttgctaggttcacagcaacagtggttgttgagtttttttttatcccaatcatgttcaactctgaatctcttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAGGTTCAATAATTATAGTTATC
species | Glycine max |
transcript | GLYMA09G36770.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAG GTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATEST: gi|254342696|gb|GR858858.1|GR858858
genomic: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGgttggtcatt ... cttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACAT
EST: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAG GTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATEST: gi|6846776|gb|AW349066.1|AW349066
genomic: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGgttggtcatt ... cttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACAT
EST: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAG GTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATEST: gi|120490996|gb|EH219163.1|EH219163
genomic: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGgttggtcatt ... cttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACAT
EST: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAG GTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATEST: gi|31474915|gb|CD416943.1|CD416943
genomic: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGgttggtcatt ... cttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACAT
EST: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAG GTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATEST: gi|31469669|gb|CD411697.1|CD411697
genomic: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGgttggtcatt ... cttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACAT
EST: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAG GTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATEST: gi|8285942|gb|BE023562.1|BE023562
genomic: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGgttggtcatt ... cttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACAT
EST: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAG GTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACAT
genomic: TTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGgttggtcatt ... cttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACAT
gttgttgagtttttttttatcccaatcatgttcaactctgaatctcttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAGGTTCAATAATTATAGTTATC
tctcttcttgc CT-rich tract
tgagtttttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaattggtacaagttatttacttgctaggttcacagcaacagtggttgttgagtttttttttatcccaatcatgttcaactctgaatctcttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAGGTTCAATAATTATAGTTATC
- - - - - - - - - -tacttgc
- - - - - - - - - - - - - - - - cacagca
- - - - - - - - - - - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctgaa