Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcattatatgtaacatgatgagtcttatcacatttcttcttacttttatgccactaagtctgatataaacgacatttgagctgcagCATGACAGAACCACAGCCAGAGTATTCTTCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTACAGCTGG
Basic information
species | Glycine max |
transcript | GLYMA09G36360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G36360.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g00250.t01 (Vitis vinifera), 3'ss of exon 7
-----gtaagttcattatatgtaacatgatgagtcttatcacatttcttcttacttttatgccactaagtctgatataaacgacatttga-gctgcagCATGACAGAACCACAGCCAGAGTATTCTTCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTACAGCTGG
| || ||| |||| || || | ||| | | | || || || || | || |||| | || | | |||||||||||| |||||||| |||| ||| | | || || ||||| |||||||||||||||||||||| | ||||||||| |||||||| || || |||
gtaagattagcacatatcttgtataattctgtcttctatgttgtaaatgtctcctatt-tgaaacgatactggagctaaattatgttctacaattcagCATGACAGAGCCACAGCCGAAGTACTCTGCTTATCGTGAAGCCAGTTTTGGACATGCCATTTTTGACACCAAGAACCGAACCCATGCTCAGTATAGTTGG
upper sequence: GLYMA09G36360.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g00230.t01 (Vitis vinifera), 3'ss of exon 7
-----gtaagttcattatatgtaacatgatgagtcttatcacatttcttcttacttttatgccactaagtctgatataaacgacatttga-gctgcagCATGACAGAACCACAGCCAGAGTATTCTTCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTACAGCTGG
| || ||| |||| || || | ||| | | | | | || || | || | || | || | | |||||||||||| |||||||| |||| ||| | | || || ||||| ||||||||||||||||||||||| | ||||||||| ||||||||||| || |||
gtaagattagcacatatcttgtataattctgtcttctatgttgtaaatgtcctcctatttgaaacgacactggagctgaattatgttctacaattcagCATGACAGAGCCACAGCCGAAGTACTCTGCTTATCGTGAAGCCAGTTTTGGACATGCCATTTTTGACATCAAGAACCGAACCCATGCTCACTATAGTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttcttcttacttttatgccactaagtctgatataaacgacatttgagctgcagCATGACAGAACCACAGCCAGAGTATTCTTCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTACAGCTGG
ttacttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcattatatgtaacatgatgagtcttatcacatttcttcttacttttatgccactaagtctgatataaacgacatttgagctgcagCATGACAGAACCACAGCCAGAGTATTCTTCATTCCGAGAGGCCAGCTTTGGACATGCCATTTTTGACATAACGAACCGAACTCATGCTCACTACAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG