1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttagttctattgtatccattccatcctatgccttgctctaatttcaatctgtctgcttgcactatttcaaatcggaactaattttttgcttttgtgaagGCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCCGGGAGGAAAGTGGATATCCTATCTGAG
species | Glycine max |
transcript | GLYMA09G35240.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAG GCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCCEST: gi|254346448|gb|GR856170.1|GR856170
genomic: GTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtatttattg ... ttttgtgaagGCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCC
EST: GGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAG GCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCC
genomic: GGAAGTTATGTGACATTGCAGAGGCATATTCCAATGATGAAAATGTTAAGgtatttattg ... ttttgtgaagGCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCC
caatctgtctgcttgcactatttcaaatcggaactaattttttgcttttgtgaagGCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCCGGGAGGAAAGTGGATATCCTATCTGAG
aactaat putative branch site (score: 2)
ttttttgcttttgt CT-rich tract
taattttttgctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttctattgtatccattccatcctatgccttgctctaatttcaatctgtctgcttgcactatttcaaatcggaactaattttttgcttttgtgaagGCTAATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTAGCAGCCGGGAGGAAAGTGGATATCCTATCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - tccatcc
- - - - - - - - - - - - - - - -ccttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgca