1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagttcctttaatatgattttttacttagccttttcctaaaatttagagttccttagctcattttatgattcaatatgctactgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT
species | Glycine max |
transcript | GLYMA09G35050.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTEST: gi|9898765|gb|BE607733.1|BE607733
genomic: GTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG AAAGGATGTCTTGNGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTEST: gi|37995321|gb|CF806910.1|CF806910
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTEST: gi|9820186|gb|BE555696.1|BE555696
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: ANGGGAGCTAGAGTGAAATGCCTCTCAAATGCTGGTTACTTTATCAATGG AAAGGATGTCTTGGGAGAACAACACATTGAACAATACTTCAGTCAAGTTGTEST: gi|15287443|gb|BI471334.1|BI471334
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG AAAGGATGTCTTGGGAEST: gi|7589608|gb|AW705379.1|AW705379
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGA
EST: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTEST: gi|33389751|gb|CA852958.1|CA852958
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
EST: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGG AAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
genomic: AGGGGAGCTAGAGTGAAATGCCTCTCAGATGCTGGTTACTTTATCAATGGgtaagttcct ... ctgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGT
ctaaaatttagagttccttagctcattttatgattcaatatgctactgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT
tcctaaa putative branch site (score: 2)
attttatgattcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcctttaatatgattttttacttagccttttcctaaaatttagagttccttagctcattttatgattcaatatgctactgttaacagAAAGGATGTCTTGGGAGAACAACACATTGAACAGTACTTCAGTCAAGTTGTTGCCACACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA