Sequence
atgc intronic sequence ATGC exonic sequence...tgaatgaatttcagttttcagaatttgatatttcatatttgtattttcaattccgaactatggtatttgtttctttacataagaatttaaacattgccagGGTACATAGCATACAATTTTGTCATTGGAGCTTACTCATACTGGGGCCCAAAGGCAGGATACAGCATTTACCATATG
Basic information
species | Glycine max |
transcript | GLYMA09G33680.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G33680.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G062024_T01 (Zea mays), 3'ss of exon 10
tgaatgaatttcagttttcagaatttgatatttcatatttgtattttcaattccgaactatggtatttgtttctttacataagaatttaaacattgccagGGTACATAGCATACAATTTTGTCATTGGAGCTTACTCATACTGGGGCCCAAAGGCAGGATACAGCATTTACCATATG
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--gttagattgc--ctctcgttgtcttatgtgtaccatt-gtttttgtacctct-acttatggttttggagt--ttactttatacctacattatt-tcagGTTATATATCCTACAATTTCGTCATTGGTGCTTATTCCTACTGGGGCCCAAAGGCAGGTCAAGAGATCTACAATATG
upper sequence: GLYMA09G33680.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G164743_T01 (Zea mays), 3'ss of exon 10
tgaatgaatttcagttttcagaatttgatatttcatatttgtattttcaattccgaactatggtatttgtttctttacataagaatttaaacattgccagGGTACATAGCATACAATTTTGTCATTGGAGCTTACTCATACTGGGGCCCAAAGGCAGGATACAGCATTTACCATATG
| | || | || | | || | ||| |||| | | |||||| || | | |||| | | | | ||| |||| || || | ||||| || |||||||| ||||| || |||||||||||||||||||| | || ||| |||||
---gttagattgtcctctcgttgtcttatgcattccatt---atttggtacctctgcttatggttttggagt--ttactttatacctacgttatt-tcagGTTATATCTCCTACAACTTCGTCATTGGTGCTTATTCCTACTGGGGCCCAAAGGCAGGTCAAGAGATCTACAATATG
upper sequence: GLYMA09G33680.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0205g00120.t01 (Vitis vinifera), 3'ss of exon 10
tgaatgaatttcagttttcagaatttgatatttcatatttgtattttcaattccgaactat--ggtatttgtttctttac-ataagaatttaaacattgccagGGTACATAGCATACAATTTTGTCATTGGAGCTTACTCATACTGGGGCCCAAAGGCAGGATACAGCATTTACCATATG
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tatagaaatttcaaatggtatggt--gttttcttaggttactaatcata-tagtaaattgtttggtttttataataatgctactactgtttattgtttggcagGATATGTATCATACAACTTTGTAATAGGAGCTTATTCATACTGGGGGCCAAAGGCTGGTTATAATATTTATCATATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaattccgaactatggtatttgtttctttacataagaatttaaacattgccagGGTACATAGCATACAATTTTGTCATTGGAGCTTACTCATACTGGGGCCCAAAGGCAGGATACAGCATTTACCATATG
tatttgtttctttaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaatgaatttcagttttcagaatttgatatttcatatttgtattttcaattccgaactatggtatttgtttctttacataagaatttaaacattgccagGGTACATAGCATACAATTTTGTCATTGGAGCTTACTCATACTGGGGCCCAAAGGCAGGATACAGCATTTACCATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
tgaatga
- - - - - - - - - - - - - - - - - - - - - - - -caattcc