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...gtgactgtatttgtctatttacatttggttttatatataggtgtgtgtgtcttcctttaatcaggaaataacttaggtgttgcatctttcttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGGTGATTTGACTCATTGGGACATTACCTTTTGGAGTGAGAGGCTACGTGA
species | Glycine max |
transcript | GLYMA09G33490.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGGATGCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGEST: gi|193703380|gb|FK636494.1|FK636494
genomic: CTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
EST: CTGGGATGCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGEST: gi|151410408|gb|EV280223.1|EV280223
genomic: CTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
EST: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGEST: gi|207728609|gb|GD707737.1|GD707737
genomic: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
EST: GGGCTTCCTGGGATCCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGEST: gi|193726753|gb|FK656887.1|FK656887
genomic: GGGCTTCCTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
EST: CTGGGATGCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGEST: gi|192308087|gb|FK000415.1|FK000415
genomic: CTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
EST: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGEST: gi|298198857|gb|HO042220.1|HO042220
genomic: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
EST: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGEST: gi|6502048|gb|AW203421.1|AW203421
genomic: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
EST: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGEST: gi|254336791|gb|GR842970.1|GR842970
genomic: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
EST: AGAACTTCTTGAAAAGCTTCGCAGGTCTTCCTGGGATGCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGEST: gi|193705878|gb|FK647084.1|FK647084
genomic: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
EST: CTGGGATGCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGEST: gi|308098840|gb|HO760681.1|HO760681
genomic: CTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAG
EST: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAG ATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
genomic: AGAACTTCTTGAAAAGCTTCGCAGGGCTTCCTGGGATCCTGCAGTGCAAGgtattgtgta ... ttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTG
tgtgtcttcctttaatcaggaaataacttaggtgttgcatctttcttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGGTGATTTGACTCATTGGGACATTACCTTTTGGAGTGAGAGGCTACGTGA
aaataac putative branch site (score: 2)
ttgcatctttcttcct putative PPT
aaataactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactgtatttgtctatttacatttggttttatatataggtgtgtgtgtcttcctttaatcaggaaataacttaggtgttgcatctttcttccttgcagATATTGAAGACCTTAAGGAATTCTCCAAAAGTCAGGGAGCATTGGAAGCTGGTGATTTGACTCATTGGGACATTACCTTTTGGAGTGAGAGGCTACGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
gtgactg
- - - - - - - - - - - - - - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgttg