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...cctaaactcttgaaactgtttccatgtaaaagtaattcaactcttaaagagaggatggatgcaccttcttgcttttaaaatgtttttgtggtggttgcagGATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGA
species | Glycine max |
transcript | GLYMA09G31760.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG GATGCCAACAAATACGAGCAACTTCTEST: gi|6724640|gb|AW309095.1|AW309095
genomic: GCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAGgtatataaat ... gtggttgcagGATGCCA-CAA-T-CGAGCAACTTCT
EST: GCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG GATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACEST: gi|23731586|gb|BU763924.1|BU763924
genomic: GCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAGgtatataaat ... gtggttgcagGATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGAC
EST: GCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG GATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACEST: gi|207840606|gb|GD812269.1|GD812269
genomic: GCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAGgtatataaat ... gtggttgcagGATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGAC
EST: CTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG GATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACEST: gi|33389673|gb|CA852880.1|CA852880
genomic: CTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAGgtatataaat ... gtggttgcagGATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGAC
EST: GCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAG GATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGAC
genomic: GCTCTGCACTGGCTTCTGTTATAATGGGTATGGCACCGGTGTTAGGGAAGgtatataaat ... gtggttgcagGATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGAC
aaagagaggatggatgcaccttcttgcttttaaaatgtttttgtggtggttgcagGATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGA
ttttaaaatgtttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaaactcttgaaactgtttccatgtaaaagtaattcaactcttaaagagaggatggatgcaccttcttgcttttaaaatgtttttgtggtggttgcagGATGCCACAATCGAGCAACTTCTGCCTATTTTCCTTTCTCTTTTGAAAGACGAGTTTCCTGATGTCAGGCTAAATATTATCAGCAAGCTTGATCAAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - -ccatgta
- - - - - - - - - - - - - - - - - - -caactct
- - - - - - - - - - - - - - - - - - - - - - - - - gaggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg