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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatacttttaatggaaactttagaactaactttacattccctatataacataaatgatgtaaatttgattttttcccctccagATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACCTTTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCA

Basic information

species Glycine max
transcript GLYMA09G26560.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G26560.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 8
----------------------------gtaagatacttttaatggaaactttagaactaactttacattccc-tatataacataaatgatgtaaatttgattttttcccctccagATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACCTTTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCA
                            ||    | ||| |      |    |  | ||||  ||   || |  ||  | |||| | | ||  |||| ||     |  |  | ||| ||||| || ||||||||||| || |||||||| || |||||||||||||| ||| || |||| | ||||||| | | |||| ||   || ||| |||| 
gtatgatcctgcagatggatggtcttctgttgtttgcttctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattactaattgaaatctg---cataacttttcagGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23735224|gb|BU765881.1|BU765881
EST:     GTGCAAGTCGAATGGCTTTGAATTGCAATGG                         ATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACC
genomic: GTGCAAGTCGAATGGCTTTGAATTGCAATGGgtaagatact ... tcccctccagATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttacattccctatataacataaatgatgtaaatttgattttttcccctccagATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACCTTTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCA
                                   tttgattttttcccct  CT-rich tract
             tatataacataaatga  TA-rich tract