1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gctgaaaagacaatcccaattgaatcttttagaggaaagaaggaacttgatatatgaggtcatcctctttattaatgtacatgcatcataattcatacagAGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTATCAACGCGGATAGATAGACCCATGCACGAGAGCAGTTGAAGAGTGCTAAT
species | Glycine max |
transcript | GLYMA09G24400.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCAT AGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTATEST: gi|6725335|gb|AW309734.1|AW309734
genomic: TAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCATgtaagtattc ... attcatacagAGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTAT
EST: TAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCAT AGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTAT
genomic: TAATGAGAAACCTGTCCATCAATTTAACTAGCCCAGATTTTGAGCATCATgtaagtattc ... attcatacagAGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTAT
cttgatatatgaggtcatcctctttattaatgtacatgcatcataattcatacagAGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTATCAACGCGGATAGATAGACCCATGCACGAGAGCAGTTGAAGAGTGCTAAT
tattaat putative branch site (score: 2)
tttattaatgtacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgaaaagacaatcccaattgaatcttttagaggaaagaaggaacttgatatatgaggtcatcctctttattaatgtacatgcatcataattcatacagAGAAAGCTGCTTTCATCATATGAGGTTGAACCAGAGAGAGATAATAACTATCAACGCGGATAGATAGACCCATGCACGAGAGCAGTTGAAGAGTGCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - caatccc
- - - - - - - - - - - - - - - - -ggaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca