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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattaactcttaagtgtttattaaccatatatgttttcttattggattcttagataatatattattaattgtttataacctgcagATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCATAGGGGTGCTTATGATTTTCTCTATCTGCCAATTGACTTTAAG

Basic information

species Glycine max
transcript GLYMA09G11630.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G11630.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 9
-------------gtatgattaactcttaagtgtttattaacca-tatatgtttt-cttattggattcttagataatatattattaatt--gtttataacctgca-gATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCATAGGGGTGCTTATGATTTTCTCTATCTGCCAATTGACTTTAAG
              ||| ||    | |||  |||  |||||| | || || |||   |||||||| |||||   |  | |||||    |   ||| |  | | || | ||||||||||| |||||  ||||||| ||||||||| |||| |||||| |||||||||| || |||||||| ||||||||||||
gtatgagcaacctttataatcg-ttgttatttgtgaattaacaactagatatttagtttattggaatcttaatcatgaaattatcttcttaatttgtcccattcaagGTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565680|gb|BE475189.1|BE475189
EST:     AGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAACAA                         ATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCATAGGGGTGC
genomic: AGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAACAAgtatgattaa ... taacctgcagATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCATAGGGGTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttttcttattggattcttagataatatattattaattgtttataacctgcagATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCATAGGGGTGCTTATGATTTTCTCTATCTGCCAATTGACTTTAAG
                                          ttataac  putative branch site (score: 2)
        ttattggattcttaga  TA-rich tract