1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttacttgctctccatttattattctactactgattcaacttacacactgctgcttttgatttatctcattgacaatggaatatatttttttggaatgcagTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACTTCAGGTTCTTGGTCTCGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT
species | Glycine max |
transcript | GLYMA09G10830.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATCCAGAAACATCAG TGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACTEST: gi|21994464|gb|BQ785992.1|BQ785992
genomic: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGgtattacttc ... tggaatgcagTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACT
EST: CTAAAACAGAAAATTCAACAACAATTCAGAAACATCAG TGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACTEST: gi|207826535|gb|GD798218.1|GD798218
genomic: CTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGgtattacttc ... tggaatgcagTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACT
EST: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAG TGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACTEST: gi|254313613|gb|GR831242.1|GR831242
genomic: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGgtattacttc ... tggaatgcagTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACT
EST: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAG TGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACT
genomic: AGTGGACCTGAGCTAAAACAGAAAATTCAACAACAATTCAGAAACATCAGgtattacttc ... tggaatgcagTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACT
actgctgcttttgatttatctcattgacaatggaatatatttttttggaatgcagTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACTTCAGGTTCTTGGTCTCGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT
cattgac putative branch site (score: 3)
tattttttt putative PPT
aatggaatatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacttgctctccatttattattctactactgattcaacttacacactgctgcttttgatttatctcattgacaatggaatatatttttttggaatgcagTGCAATGATGGATTGTGTAGGATGTGAGAAATGTCGATTATGGGGCAAACTTCAGGTTCTTGGTCTCGGAACTGCATTAAAGATTCTCTTCTCTGTTGAT
- - - -ctctcca
- - - - - - - - - - - - -actactg
- - - - - - - - - - - - - - - - - - - - tacacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgga