Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttccattgaacagcagtataaaaaggcattaatcattttgattctcgaaagacaagatttataataatcttttcttaactgaatttgtttttctttagTTTCTGCTCGCGGTTCTGGGAAGCATCCTCAACTCGTGCCATCAACTCCAAGATGGGCAGTTGCTAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA

Basic information

species Glycine max
transcript GLYMA09G07240.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07240.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g08700.1 (Oryza sativa), 3'ss of exon 8
ttttccattgaacagcagtataaaaaggcattaatcattt---tgattctcgaaagacaagatttataataatcttttcttaactgaatttgttt---ttctttagTTTCTGCTCGCGGTTCTGGGAAGCATCCTCAACTCGTGCCATCAACTCCAAGATGGGCAGTTGCTAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
       ||   | ||| |  |    | | || ||| |||   ||   |||| | |  ||   |||| |||| |     |||     || || ||   |  || || ||     || || ||||||||||| || |||||  ||||||| || || |||||||| ||||| ||||| ||||| |||||| ||||||| ||||||||
------gtttttctgcattggagtgggacctttatctttttcttgcaactcggatgctaatgcttattataaacacaagttactaacatgtgcttgggtcattcagCTTACAGCCGAGGATCTGGGAAGCACCCACAACTTATGCCATCCACGCCCAGATGGGCTGTTGCCAATGGAGCTGGAGTTATACTAAGTGTCTGTGATGA

upper sequence: GLYMA09G07240.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G107101_T05 (Zea mays), 3'ss of exon 8
---------------ttttccattgaacagcagtataaaaaggcattaatcattttgattctcgaaagacaagatttataataatcttttcttaactgaatttgtttttctttagTTTCTGCTCGCGGTTCTGGGAAGCATCCTCAACTCGTGCCATCAACTCCAAGATGGGCAGTTGCTAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
                |  | |||     |   | ||   ||   || || || ||  || |  |  || || | || ||| |   | | | |   |||            |||| ||     || || ||||||||||| || || ||  |||| || || || |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||
aggacaaacccagaagtagctattattttgggatgtaggtagtacttgataatgtttgttgtgtatggaaaaaagttctaaca---tatccctgtgtga------------ttagCTTGCAGCCGAGGATCTGGGAAGCACCCACAGCTTATGCCTTCCACCCCCAGATGGGCTGTTGCCAATGGAGCTGGAGTTATATTAAGTGTCTGTGATGA

upper sequence: GLYMA09G07240.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM5G844173_T01 (Zea mays), 3'ss of exon 7
ttttccattgaacagcagtataaaaaggcattaatcattttgattctcgaaagacaagatttataataatcttttctt-----aactgaatttgtttttc-----tttagTTTCTGCTCGCGGTTCTGGGAAGCATCCTCAACTCGTGCCATCAACTCCAAGATGGGCAGTTGCTAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
           |||     |   | | | ||  ||  ||| |  | | |  ||       | ||  |  |  | | |      || | ||  | |   |      ||||| ||     || || ||||| ||||| || |||||  |||| || || || |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||
----------gacaaacccagccagaagtatctatattttgggatgtaggtagtagtcgataatgtttgttgtgtatggaaaaaaatcaacatatccctgggtgatttagCTTACAGCCGAGGATCTGGAAAGCACCCACAACTTATGCCTTCCACCCCCAGATGGGCTGTTGCCAATGGAGCTGGAGTTATATTAAGTGTCTGTGATGA

upper sequence: GLYMA09G07240.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G22770.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------------------------------------------ttttccattgaacagcagtataaaaaggcattaatcattt-tgattctcgaaagacaagatttataataatcttttcttaactgaat-ttgtttttctttagTTTCTGCTCGCGGTTCTGGGAAGCATCCTCAACTCGTGCCATCAACTCCAAGATGGGCAGTTGCTAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA---
                                                                     | ||| ||      |    |||||   | ||  ||||  | ||  | | ||| |      |||  | |    |  | | |  |  || ||||  | |||| |   || |||| || ||||| || |||||||||||  |||| ||||| ||||||||||| ||||||||||| |||||||| ||| | ||||||||||||||   
gtgagttcaagaattccatgttaatatcccctggaactggattttgatgataattctgatcaatagagttgttctatcacttcgtt-cataaatgtgtatccatcacctgtggctatagaatgt----gttttgagttgcttcctataactttcatgttgtcctactttggcagCTTCTCGAGGATCTGGTAAACATCCTCAACTGATGCCTTCAACCCCAAGATGGGCTGTTGCTAATGGAGCTGGTGTCATACTGAGTGTTTGTGATGATGA

upper sequence: GLYMA09G07240.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0157g00020.t01 (Vitis vinifera), 3'ss of exon 8
--ttttccattgaacagcagtataaaaaggcattaatcattttgattctcgaaagacaagatttataataa--tcttttcttaactgaatttgtttttcttta-gTTTCTGCTCGCGGTTCTGGGAAGCATCCTCAACTCGTGCCATCAACTCCAAGATGGGCAGTTGCTAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
  | ||   |   | |   |  |   ||   | || | |||||| |    | |   | ||   |  || ||  ||  || ||||   | ||  | |||||  | | |||| |||| || ||||| ||||| || || ||| | |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||
tctgttgtgtcttatatttgctttctaa---actagt-attttg-taaaagcatttctagtcctggaacaaggtccatttttaatcaacttcttctttctccaagCTTCTACTCGTGGATCTGGAAAGCACCCCCAGCTCATTCCATCAACTCCAAGGTGGGCTGTTGCTAATGGTGCAGGTGTGATATTAAGTGTTTGTGATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgaaagacaagatttataataatcttttcttaactgaatttgtttttctttagTTTCTGCTCGCGGTTCTGGGAAGCATCCTCAACTCGTGCCATCAACTCCAAGATGGGCAGTTGCTAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGA
                             tcttaac  putative branch site (score: 2)
                                        tttgtttttcttt  putative PPT
             atttataataatcttt  TA-rich tract