1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagagtgttagagagtgtattgttggcatttcgcaatttgtctctgttgaaaagctgtgtatgttagattgagttcttgatgtggttttcattttggcagGGAATTCAAGGTGGGTTTATGCCATGGAGTGGTCAGGCCAAAAGGCATTTGGAACATCTCCTACAGTGAAATTTGTTGTTGATGGTGCAGAAGCAGGGTC
species | Glycine max |
transcript | GLYMA09G05470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGTTGCTTGTGTATGCAGGGGAAGAAGATCTCATATGCAATTGGCTTG GGAATTCAAGGTGGGTTTATGCCATGGAGTGGTCAGGCCAAAAGGCATTTGEST: gi|4294449|gb|AI442192.1|AI442192
genomic: CAAGTTGCTTGTGTATGCAGGGGAAGAAGATCTCATATGCAATTGGCTTGgtgagaatga ... attttggcagGGAATTCAAGGTGGGTTTATGCCATGGAGTGGTCAGGCCAAAAGGCATTTG
EST: CAAGTTGCTTGTGTATGCAGGGGAAGAAGATCTCATATGCAATTGGCTTG GGAATTCAAGGTGGGTTTATGCCATGGAGTGGTCAGGCCAAAAGGCATTTG
genomic: CAAGTTGCTTGTGTATGCAGGGGAAGAAGATCTCATATGCAATTGGCTTGgtgagaatga ... attttggcagGGAATTCAAGGTGGGTTTATGCCATGGAGTGGTCAGGCCAAAAGGCATTTG
gttgaaaagctgtgtatgttagattgagttcttgatgtggttttcattttggcagGGAATTCAAGGTGGGTTTATGCCATGGAGTGGTCAGGCCAAAAGGCATTTGGAACATCTCCTACAGTGAAATTTGTTGTTGATGGTGCAGAAGCAGGGTC
tcttgat putative branch site (score: 4)
ttttcatttt putative PPT
ttttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagagtgttagagagtgtattgttggcatttcgcaatttgtctctgttgaaaagctgtgtatgttagattgagttcttgatgtggttttcattttggcagGGAATTCAAGGTGGGTTTATGCCATGGAGTGGTCAGGCCAAAAGGCATTTGGAACATCTCCTACAGTGAAATTTGTTGTTGATGGTGCAGAAGCAGGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- gagtgtt
- - - - - - - - - - - - -gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - gaaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgtgg