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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaaactttatcttgatagttatacttgccattatatataaattaaaaaatatgtttgtcattggattttaactattgtgttttcctcaccagTCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTCTGAACGACTGTCATGTCCATAATGGGCATCGTGAGTCTCAAGGATCACG

Basic information

species Glycine max
transcript GLYMA09G04940.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04940.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0020g01160.t01 (Vitis vinifera), 3'ss of exon 6
gtctgaaactttatcttgatagttat--acttgccattatatataaattaaaaaatatgtttgtc---attggatttt--aactattgtgttttcctcaccagTCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTCTGAACGACTGTCATGTCCATAATGGGCATCGTGAGTCTCAAGGATCACG
    |  ||  |   || | |||||   |  |  |     ||  |||  |  |  ||||||| ||   | || ||| |  | ||  |||||||   |  | || |||| | |||||| |||| || || ||||||||||| ||  ||||||||||||| ||||| ||||||||||||||   |  ||| |||||  |  | | 
----gttacactgcttttacagttactaatctatctcgtcatggaaacaatgatttatgtttatccagagtgaattcttcatctgatgtgtttggattgc-agCCAAGGCACCTCTTCTAGCTTATAACAGTTTTGTTGAAGCCATTTTTGTTCTGAATGACTGCCATGTCCATAATGGAGGTAATGATTCTCAGAGTACGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaattaaaaaatatgtttgtcattggattttaactattgtgttttcctcaccagTCAAGTCTCCTCTTTTAGCATACAATAGTTTTGTTGAGGCTGTTTTTGTTCTGAACGACTGTCATGTCCATAATGGGCATCGTGAGTCTCAAGGATCACG
                            ttttaac  putative branch site (score: 2)
                                          ttttcctcacc  putative PPT
     taaaaaatatgtttgt  TA-rich tract