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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctctctctctctctctctctctcttttaacacacaacatgcacacacgtcctaatctgtgcatgttgtgcattattgccatatttggaaattattggttcctcattcaactttttcttacaactttgcaaatgttcccattcttttcttttgattaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTCATGGAAAAGCTTGGTTATCTTAATTATTCTTATACTCCTTGGGTATCTG

Basic information

species Glycine max
transcript GLYMA09G01830.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193417574|gb|FK385072.1|FK385072
EST:     TGGATGATGTTAGCATGTCTGATATTTATTCTTGTTCTCTTTCAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|193391472|gb|FK355097.1|FK355097
EST:     TGGATGATGTTAGCATGTCTGATATTTATTCTTGTTCTCTTTCAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|193525691|gb|FK481098.1|FK481098
EST:     TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTTAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|207813011|gb|GD783657.1|GD783657
EST:     TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|193352409|gb|FK316805.1|FK316805
EST:     GGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCT                         GCAAGTTACCTCATGGAGAGATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|207735960|gb|GD709389.1|GD709389
EST:     TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|193445905|gb|FK413514.1|FK413514
EST:     TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|192296502|gb|FG989118.1|FG989118
EST:     TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|193483781|gb|FK451890.1|FK451890
EST:     ATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: ATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
EST: gi|193560661|gb|FK519814.1|FK519814
EST:     TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCT                         GCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC
genomic: TGGATGATGTTAGCATGTCTGAGATTTATTCTTGTTCTCTTTCAATTCCTgtaatctctc ... attaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactttttcttacaactttgcaaatgttcccattcttttcttttgattaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTCATGGAAAAGCTTGGTTATCTTAATTATTCTTATACTCCTTGGGTATCTG
                          ttcccattcttttctt  CT-rich tract
                               attcttttcttttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatctctctctctctctctctctctcttttaacacacaacatgcacacacgtcctaatctgtgcatgttgtgcattattgccatatttggaaattattggttcctcattcaactttttcttacaactttgcaaatgttcccattcttttcttttgattaatttagGCAAGTTACCTCATGGAGATATTTAGCGGGGGTGAGTTGGACCGTCGGGTCATGGAAAAGCTTGGTTATCTTAATTATTCTTATACTCCTTGGGTATCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA