1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttctcttaaaagaagttatttcttttttattttgtatttgattcgttttcaagtcttttcacactggaattatcttcatatatatctgctccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG
species | Glycine max |
transcript | GLYMA09G01820.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTAC-TTCCA GTTGCATGTGCAT-GCTTATGGCGGGTGAG-ATCTAGACAEST: gi|193566982|gb|FK525083.1|FK525083
genomic: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCAgtaagtatta ... ccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACA
EST: ATCGACGTATAGTTCAGTACAAGACTGCATATTATTCATTTTACCTTCCA GTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGATEST: gi|192325137|gb|FK017523.1|FK017523
genomic: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCAgtaagtatta ... ccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGAT
EST: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCA GTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGATEST: gi|7028813|gb|AW458596.1|AW458596
genomic: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCAgtaagtatta ... ccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGAT
EST: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCA GTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGATEST: gi|7284732|gb|AW597282.1|AW597282
genomic: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCAgtaagtatta ... ccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGAT
EST: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCA GTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGATEST: gi|12774645|gb|BG239572.1|BG239572
genomic: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCAgtaagtatta ... ccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGAT
EST: ATCGACGTATAGTTCAGTACAAGACTGCGTACTATTCATTTTACCTTCCA GTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGAT
genomic: ATCGACGTATAGTTCAGTACAAGACTGCATACTATTCATTTTACCTTCCAgtaagtatta ... ccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGAT
ttttcaagtcttttcacactggaattatcttcatatatatctgctccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG
tccttac putative branch site (score: 2)
tctgctcctt CT-rich tract
aattatcttcatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcttaaaagaagttatttcttttttattttgtatttgattcgttttcaagtcttttcacactggaattatcttcatatatatctgctccttacacagGTTGCATGTGCATTGCTTATGGCGGGTGAGGATCTAGACAAAAATGTTGATGTAAAGAACATTCTTGTTGAGATGGGAACATACTTTCAAGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatctgc