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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttaagttcttgacaatctactcattaacattgtagtaatttcttcattgataaaattgatgactgattgattcatgatcctgactctgtagGAGCACATGTTGGACCAGAACCTACCACCGATAGATTTGTTGTTGTCATG

Basic information

species Glycine max
transcript GLYMA09G01160.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01160.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 3'ss of exon 10
gtaggttaagttcttgacaatctactcattaacattgtagtaatttct--tcattgataaaattgatgactgattgatt-catgatcctgactctgtagGAGCACATGTTGGACCAGAACCTACCACCGATAGATTTGTTGTTGTCATG
||| || || ||  ||    |||  || |     ||  ||| |   ||  |     | ||  | | |   ||  | | |   |  | ||   |   ||||||| ||  |||||||||| ||||| |||||| | |||||||||||||||
gtaagtaaactttctgtt--tctgttcttccctttttcagttacaactagttgagaacaatttcgtttcttggcttactatttccttctttttggatagGAGCTCACATTGGACCAGAGCCTACAACCGATCGTTTTGTTGTTGTCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttcttcattgataaaattgatgactgattgattcatgatcctgactctgtagGAGCACATGTTGGACCAGAACCTACCACCGATAGATTTGTTGTTGTCATG
                                         tcctgac  putative branch site (score: 2)
      ttcattgataaaatt  TA-rich tract