Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattttcataattttttactatgtaaataactgttcttactaaaatgatttgtgttcgaaactgcactctattaatctttactttactgacactgttaagGTTACAAGGGAAGTCTCAGATAGTTCAGGATGAATTGGCAAGGCTTGGTGAGTCAATGGTCACCACTTCAGAGGGTACACGTGCTATAGCCTTGGAACTT

Basic information

species Glycine max
transcript GLYMA09G00430.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00430.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0089g00350.t01 (Vitis vinifera), 3'ss of exon 7
aattttcataattttttactatgtaaataactgttcttactaaa--atgatttgtgttcgaaactgcactctattaatctttactttactgacactgttaagGTTACAAGGGAAGTCTCAGATAGTTCAGGATGAATTGGCAAGGCTTGGTGAGTCAATGGTCACCACTTCAGAGGGTACACGTGCTATAGCCTTGGAACTT
   |  || |  |    |  |  || | |  | |  |  ||  |  |||     | |||     ||   ||     ||||  | ||   |  |  | |  ||||||||||| ||||| || ||||||  |||||| || ||||||||||||||   |||||||   | ||| || || ||  | |||||||| |||||||||
-gataccacagctcaggaacacatatagatttttcgtctctggactatggcagttattctcc-ttgagttcctaatatctccatttctttacccttctgtagGTTACAAGGAAAGTCCCAAATAGTTGGGGATGAGTTAGCAAGGCTTGGTGAACAAATGGTCCATAGTTCTGAAGGCACTAGGGCTATAGCTTTGGAACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208157897|gb|GD954150.1|GD954150
EST:     CACCAGATTCAGAATCGTATGAAGCTTCGGCTTCCTAACCTTCTTTCTGG                         GTTACAAGGGAAGTCTCAGATAGTTCAGGATGAATTGGCAAGGCTTGGTGA
genomic: CACCAGATTCAGAATCGTATGAAGCTTCGGCTTCCTAACCTTCTTTCTGGgtaagtacca ... cactgttaagGTTACAAGGGAAGTCTCAGATAGTTCAGGATGAATTGGCAAGGCTTGGTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatttgtgttcgaaactgcactctattaatctttactttactgacactgttaagGTTACAAGGGAAGTCTCAGATAGTTCAGGATGAATTGGCAAGGCTTGGTGAGTCAATGGTCACCACTTCAGAGGGTACACGTGCTATAGCCTTGGAACTT
                                       tactgac  putative branch site (score: 1)
                        tattaatctttacttt  TA-rich tract