Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccatcattttttttcactttgccaattttttataattatgttcgagttgatctaaaacaaatattaggattagctttaaaggacttgtttgttgtctggccttgtttgtgttaaagaaacttaaaaaccatagtttcctttgctgtatctcatcatagcaataccttgttactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACA

Basic information

species Glycine max
transcript GLYMA08G47790.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47790.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 6
gtaagccatcattttttttcactttgccaattttttataattatgttcgagttgatctaaaacaaatattaggattagctttaaaggacttgtttgttgtctggccttgtttgtgttaaagaaacttaaaaaccatagtttcctttgctgtatctcatcatagcaataccttgttactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACA
                 |   | ||   |   | ||  ||      | |  ||   |   ||    | | || ||      |||   | || | |    | |  | |     ||   | | |    |||   ||||| ||| ||                   |||   | |     ||| ||||| ||||||||||| |||||||| || ||||||||| |||| ||||||   || || |||||||| || || |||| ||||||||||||||| || ||||
----------------gtgagccttctta---tattgcaacctcagttggatttggcagtaattgttgtcagcat----cctaagaaagttatctaccattta-cttaaacagttccataaa----taaggtccataatttactgc-----------------caacttcct-----ttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTTGTTTCAAGGACAATTGATTCCAATGTATCTGAAGCTGAAGGCATTTACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208278775|gb|GE078750.1|GE078750
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|19345891|gb|BM890771.1|BM890771
EST:     CTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254322566|gb|GR837980.1|GR837980
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|10236361|gb|BE805249.1|BE805249
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254345896|gb|GR859543.1|GR859543
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254336568|gb|GR842747.1|GR842747
EST:     CTTATATGTTGCT-CTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|18733937|gb|BM527895.1|BM527895
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCA
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCA
EST: gi|14991073|gb|BI316746.1|BI316746
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|10709227|gb|BF008951.1|BF008951
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|6963502|gb|AW432195.1|AW432195
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|37997207|gb|CF808796.1|CF808796
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|193475859|gb|FK442556.1|FK442556
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|209718568|gb|BW662686.1|BW662686
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|192327587|gb|FK020634.1|FK020634
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|13481537|gb|BG510880.1|BG510880
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|208265460|gb|GE062652.1|GE062652
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTAT
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTAT
EST: gi|15000920|gb|BI321734.1|BI321734
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|58024883|gb|CX711624.1|CX711624
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|14259727|gb|BG882635.1|BG882635
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|6719617|gb|AW307264.1|AW307264
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|192309108|gb|FG999391.1|FG999391
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|9986111|gb|BE660219.1|BE660219
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|58018946|gb|CX705688.1|CX705688
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|22525366|gb|BU084177.1|BU084177
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|151403066|gb|EV272876.1|EV272876
EST:     GGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: GGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|5058472|gb|AI736883.1|AI736883
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTAT-GATCATG
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATG
EST: gi|57575715|gb|CX548690.1|CX548690
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|10846217|gb|BF071272.1|BF071272
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|17021884|gb|BM092918.1|BM092918
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254335504|gb|GR847032.1|GR847032
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|6847089|gb|AW349379.1|AW349379
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|57575533|gb|CX548508.1|CX548508
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|4304431|gb|AI443618.1|AI443618
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATT
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATT
EST: gi|254326693|gb|GR832845.1|GR832845
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|21887269|gb|BQ740482.1|BQ740482
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|21889891|gb|BQ743104.1|BQ743104
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|298189058|gb|HO037461.1|HO037461
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|298189327|gb|HO037730.1|HO037730
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCAT
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCAT
EST: gi|16346820|gb|BI972415.1|BI972415
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|208137463|gb|GD938883.1|GD938883
EST:     TTATTGGACCCGACACT                         GTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACC
genomic: TTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|12774774|gb|BG239722.1|BG239722
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254326692|gb|GR832844.1|GR832844
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|21639189|gb|BM140235.1|BM140235
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
EST: gi|21638754|gb|BM139800.1|BM139800
EST:     CAGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGT
EST: gi|7692059|gb|AW760174.1|AW760174
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|298172428|gb|HO019468.1|HO019468
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|6502287|gb|AW203660.1|AW203660
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|9899114|gb|BE608141.1|BE608141
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254336567|gb|GR842746.1|GR842746
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|17963707|gb|BM270453.1|BM270453
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|254336111|gb|GR841436.1|GR841436
EST:     CTGCCTATTCTGACACTTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|26269430|gb|CA820493.1|CA820493
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|10236155|gb|BE805043.1|BE805043
EST:     CTGCCTATACTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAATCCCTTCAAGCATT-ATTG
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTG
EST: gi|58019244|gb|CX705986.1|CX705986
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|15000882|gb|BI321696.1|BI321696
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
EST: gi|22525219|gb|BU084030.1|BU084030
EST:     CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACT                         GTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC
genomic: CTGCCTATTCTGACACCTTATATGTTGCTCCTCTTATTGGACCCGACACTgtaagccatc ... tactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaccatagtttcctttgctgtatctcatcatagcaataccttgttactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACA
                                       ccttgttactttcc  CT-rich tract
     atagttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagccatcattttttttcactttgccaattttttataattatgttcgagttgatctaaaacaaatattaggattagctttaaaggacttgtttgttgtctggccttgtttgtgttaaagaaacttaaaaaccatagtttcctttgctgtatctcatcatagcaataccttgttactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA