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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttaccttgtattatcccattattgctttatctttttaaatttctaaatcttgtccttgtgaatacacgaagagtgatacttctggagttacagaattttgtgtgttttattcagattcatgatattgtattccctctgtattttaataaaaaaaagtctcctttttctacagGAATTTTTGAAGGAAGAACCATACACAGCTGAAGAAATTGAGAAAATTATTGATGAAAACCTCACCTCAATTTTTAGCAATAATCCTATTTATTTGAATG

Basic information

species Glycine max
transcript GLYMA08G47350.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47350.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G06580.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaactttaccttgtattatcccattattgctttatctttttaaatttctaaatcttgtccttgtgaatacacgaagagtgatacttctggagttacagaattttgtgtgttttattcagattcatgatattgtattccctctgtattttaataaaaaaaagtctccttttt-ctacagGAATTTTTGAAGGAAGAACCATACACAGCTGAAGAAATTGAGAAAATTATTGATGAAAACCTCACCTCAATTTTTAGCAATAATCCTATTTATTTGAATG
                                            |    | |||  | || |||  || ||  |  |  ||||  |     | |||      | | ||||| | | |  |||   | || || |          |||||      | |    |||  | | | || ||||||| | |||| |||||||||||||| ||||| || |||||||||||  | || || ||  |  | |||||  | | |||| |||| |  | ||||  ||
------------------------------------------gtacgcatcaattat-tcattgccaaaactggcggtttgatgtt----aaattat----ctctctgtgtatcagtt-gatctctaatgttttggaag----atatttagggttatatgcttcttgtctatgcttcagGAATATCTGAAAGAAGAACCATACACGGCTGAGGAGATTGAGAAAATCCTAGAGGAGAAATTACCATCAATCGTGAACAATGATCCAACATCTTTGGCTG

upper sequence: GLYMA08G47350.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0077g00690.t01 (Vitis vinifera), 3'ss of exon 8
gtaactttaccttgtattatcccattattgctttatctttttaaatttctaaatcttgtccttgtgaatacacgaagagtgatacttctggagttacagaattttgtgtgttttattcagattcatgatattgtattccctctgtattttaataaaaaaaagtctcctttttctac---agGAATTTTTGAAGGAAGAACCATACACAGCTGAAGAAATTGAGAAAATTATTGATGAAAACCTCACCTCAATTTTTAGCAATAATCCTATTTATTTGAATG
                                                                                 |||| || ||| ||  |   ||| || ||  | |  || | |  |   | | |  ||  ||  |||   | ||  ||    ||| || | | |||   ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||  ||  | ||| | ||| |||||   || |  | |||| |||
-------------------------------------------------------------------------------ctatacctcaggattt-tatggtttggtttgagtcaaacataatggtttcacttt-ctcattccatatcagattattaacgtttcttctctctttaccctagGAATTTTTGAAGGAAGAACCATATACAGCTGAAGAAATTGAGAAAATCATTGAGGAAAGTCTGCCATCAGTCTTTGGCAATTCGCCAACCTCTTTGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgatattgtattccctctgtattttaataaaaaaaagtctcctttttctacagGAATTTTTGAAGGAAGAACCATACACAGCTGAAGAAATTGAGAAAATTATTGATGAAAACCTCACCTCAATTTTTAGCAATAATCCTATTTATTTGAATG
                       ttttaat  putative branch site (score: 3)
                                       tctcctttttctac  putative PPT
                     tattttaataaaaaaa  TA-rich tract