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...tgtctaagttaaatgttggtgatggaagaactggtcaagattcttgcaatttagattatattcatttatgatttctgtcattataatgataattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
species | Glycine max |
transcript | GLYMA08G46170.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCGCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCC GTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACCTGEST: gi|16343443|gb|BI969038.1|BI969038
genomic: GCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCgtaagtgttt ... aattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
EST: ATACCATCCATACCGTTCACTATCTCC GTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGEST: gi|21256573|gb|BQ453461.1|BQ453461
genomic: ATACCATCCATACCGTTCACTATCTCCgtaagtgttt ... aattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
EST: GTTCACTATCTCC GTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTGEST: gi|192305231|gb|FG993969.1|FG993969
genomic: GTTCACTATCTCCgtaagtgttt ... aattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
EST: GCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCC GTTGCTTCAGGATGC-GGTCTGA-TGATCTAAACATGACTCA-CTAACTTG
genomic: GCTCTTAATTATTACCTGGTTGTATACCATCCATACCGTTCACTATCTCCgtaagtgttt ... aattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
gcaatttagattatattcatttatgatttctgtcattataatgataattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
ttctcc CT-rich tract
ttagattatattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctaagttaaatgttggtgatggaagaactggtcaagattcttgcaatttagattatattcatttatgatttctgtcattataatgataattctccagGTTGCTTCAGGATGCAGGTCTGAATGATCTAAACATGACTCAACTAACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG