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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacaataatgaagtttcttgttgcctcatgtcttttagctttaactaacgttcaactttgttttagGTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTGTCTGCATCAAGTTACTCTTATATTTCTTTACTCAAACACTTTCTTCCAA

Basic information

species Glycine max
transcript GLYMA08G45990.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345261|gb|BI970856.1|BI970856
EST:     ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAG                         GTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTG
genomic: ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattacaat ... tttgttttagGTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTG
EST: gi|8283272|gb|BE020833.1|BE020833
EST:     ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAG                         GTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTG
genomic: ATTTTGGCACTATCGACATACTTGTGCACTCGCTTGCTAATGGACCAGAGgtattacaat ... tttgttttagGTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttcttgttgcctcatgtcttttagctttaactaacgttcaactttgttttagGTCAGCAAACTATTGTCCGAGACATCTCGGAAAGGATATCTTGCTGCCCTGTCTGCATCAAGTTACTCTTATATTTCTTTACTCAAACACTTTCTTCCAA
                               aactaac  putative branch site (score: 1)
                                            ctttgtttt  putative PPT
                            tttaactaa  TA-rich tract