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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggttttgattgttctgctcacatacctgcgtgcacacatattcatattaataggttttatttctgtagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG

Basic information

species Glycine max
transcript GLYMA08G44920.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G44920.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 8
gtgaggttttgattgttctgc-tcacatacctgcgtgcacacatattcatattaataggtttta--tttctgtagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG
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gtgagcattttcctggcttgcatttcatgtgttactgttcttaatttcctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctcacatacctgcgtgcacacatattcatattaataggttttatttctgtagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG
                               tattaat  putative branch site (score: 2)
                                         ttttatttct  putative PPT
                      acatattcatattaat  TA-rich tract